PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
79151-79200 / 86044 show all
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
90.6827
89.7196
91.6667
60.0255
28803302871261260
99.6169
gduggal-bwavardINDEL*segduphet
90.5367
97.4761
84.5196
96.2639
1429371425261213
81.6092
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.6223
87.8582
95.7234
63.6163
738810215842261219
83.9080
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.4149
99.8046
95.1369
54.7737
5107105106261260
99.6169
ciseli-customSNPtifunc_cds*
98.7839
99.4488
98.1278
24.0438
13711761368026131
11.8774
cchapple-customSNPtimap_l150_m0_e0het
95.1985
95.5072
94.8918
84.4938
4868229486726276
29.0076
ckim-dragenSNPtvmap_l100_m0_e0het
97.5576
98.6846
96.4561
76.6502
712795713126221
8.0153
gduggal-snapplatSNPtvmap_l150_m0_e0het
88.2289
86.2117
90.3428
90.9621
24513922451262132
50.3817
gduggal-snapfbINDELI1_5HG002compoundhethetalt
85.0180
77.5969
94.0087
72.7861
867325044111262204
77.8626
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.6852
99.1559
98.2189
80.5400
144481231444826215
5.7252
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.6852
99.1559
98.2189
80.5400
144481231444826215
5.7252
jmaeng-gatkSNPtvmap_l100_m0_e0het
84.7992
76.2808
95.4593
88.1483
55091713550826210
3.8168
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.2445
96.0604
98.4581
67.5236
1711770216730262221
84.3511
qzeng-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.8622
99.1709
98.5554
65.0606
177031481787426243
16.4122
qzeng-customSNPtvmap_l100_m0_e0het
85.0006
76.5993
95.4718
87.4215
553216905524262216
82.4427
eyeh-varpipeSNPtimap_l150_m2_e1*
99.1748
99.6284
98.7252
78.8203
20646772029126216
6.1069
ckim-vqsrSNPtimap_siren*
86.3605
76.1935
99.6585
68.7036
76464238917645126225
9.5420
rpoplin-dv42INDEL**homalt
99.5190
99.2498
99.7896
55.3247
124233939124240262239
91.2214
rpoplin-dv42INDELD16_PLUSHG002compoundhethet
71.2910
94.8148
57.1195
50.0000
38421349262262
100.0000
rpoplin-dv42SNP*map_l125_m1_e0*
99.2363
99.0558
99.4176
68.8661
4489942844893263168
63.8783
hfeng-pmm2SNPtimap_sirenhet
99.5502
99.5223
99.5781
56.1068
620842986207526319
7.2243
jlack-gatkINDELD1_5*homalt
99.6645
99.8651
99.4647
59.9060
488606648867263260
98.8593
jmaeng-gatkSNPtvmap_l100_m0_e0*
81.7650
70.7957
96.7567
85.8314
78473237784626311
4.1825
jmaeng-gatkSNPtvmap_l150_m2_e1het
84.1017
75.1633
95.4530
91.0507
5523182555212637
2.6616
jli-customSNP*map_l100_m2_e0het
99.2823
99.1336
99.4314
64.8428
459974024599426362
23.5741
jli-customSNPtimap_siren*
99.6599
99.5825
99.7375
51.1882
999364199992926366
25.0951
jpowers-varprowlINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
67.3887
79.3103
58.5827
62.2024
36896372263261
99.2395
jpowers-varprowlSNPtvsegduphet
96.8798
98.6193
95.2007
93.8679
52147352172634
1.5209
cchapple-customSNPtimap_l150_m0_e0*
95.9984
95.3950
96.6095
81.4997
7499362749426377
29.2776
bgallagher-sentieonSNPtvmap_sirenhet
99.3778
99.6714
99.0859
61.4179
28515942851026327
10.2662
anovak-vgINDEL*map_l150_m2_e1het
71.2728
70.4545
72.1103
91.6230
65127368026375
28.5171
dgrover-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5418
99.9350
99.1517
74.5652
307412030741263257
97.7186
ckim-vqsrINDEL*HG002complexvar*
99.2578
98.8640
99.6548
58.2159
7606487475924263222
84.4106
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.0581
99.5974
96.5657
46.5037
74223073952639
3.4221
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.3994
95.4409
95.3578
49.7393
54222595423264128
48.4848
ciseli-customSNPtimap_l250_m2_e0homalt
82.1383
80.2173
84.1537
87.5709
14033461402264189
71.5909
ckim-dragenSNPtvmap_l150_m2_e0het
97.5182
98.6211
96.4396
82.0747
7152100715126417
6.4394
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.6040
99.7536
95.5451
59.8944
5667145662264263
99.6212
jlack-gatkINDEL*map_l100_m2_e0het
93.6860
98.1795
89.5858
89.8045
226542227126422
8.3333
raldana-dualsentieonINDELI1_5HG002compoundhethomalt
70.9467
99.0881
55.2542
86.1176
3263326264264
100.0000
raldana-dualsentieonSNPtimap_l125_m1_e0het
98.7264
98.8941
98.5593
72.2989
18064202180602643
1.1364
gduggal-snapplatSNPtvmap_l150_m0_e0*
88.3530
84.1399
93.0103
89.4841
35126623513264134
50.7576
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
94.6036
99.2382
90.3825
74.1987
24751924812641
0.3788
jmaeng-gatkSNPtvmap_l150_m2_e1*
80.0731
68.3012
96.7480
89.5225
7856364678542648
3.0303
jli-customINDELD1_5**
99.6468
99.4746
99.8195
58.9401
145974771146018264201
76.1364
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
84.1712
93.6594
76.4286
83.9334
10347085626445
17.0455
gduggal-bwaplatINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
64.8666
51.1386
88.6695
86.4061
20661974206626462
23.4848
gduggal-bwavardINDEL*segdup*
89.7413
89.8670
89.6160
95.3552
22972592287265217
81.8868
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
86.2766
99.2958
76.2757
84.3842
8466852265167
63.0189
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
77.8419
75.4167
80.4284
80.2278
108635410892653
1.1321