PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
79101-79150 / 86044 show all
gduggal-bwafbSNPtilowcmp_SimpleRepeat_diTR_11to50het
95.0382
97.9352
92.3077
77.3745
308365309625864
24.8062
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
72.9905
59.8984
93.4066
85.0088
36552447365525842
16.2791
eyeh-varpipeSNPtimap_l150_m2_e0*
99.1763
99.6246
98.7319
78.7456
20435772008825816
6.2016
gduggal-bwafbSNPtvmap_l125_m2_e0*
98.6658
98.8902
98.4424
74.7627
163061831630625851
19.7674
gduggal-bwafbSNPtvmap_l125_m2_e1*
98.6792
98.9014
98.4580
74.8361
164741831647425851
19.7674
ckim-vqsrSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4494
99.3637
99.5353
61.3550
552773545526625827
10.4651
dgrover-gatkSNP*map_l150_m1_e0*
99.1521
99.1473
99.1569
77.1188
303482613034225859
22.8682
jlack-gatkINDEL*map_l100_m1_e0het
93.6574
98.2103
89.5079
89.1540
219540220125820
7.7519
jlack-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4351
99.7890
99.0837
56.5880
27900592789925821
8.1395
cchapple-customSNP*map_l250_m1_e0het
95.0712
95.5205
94.6261
91.1826
4542213454325861
23.6434
ckim-dragenSNPtvmap_l150_m1_e0het
97.4517
98.5603
96.3677
80.7125
6846100684525817
6.5892
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.8361
99.3147
98.3621
62.3698
1565210815494258231
89.5349
asubramanian-gatkINDEL**hetalt
95.6373
92.5665
98.9188
59.3274
23361187623605258236
91.4729
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.8405
84.9119
86.7896
57.5804
17843171695258252
97.6744
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1240
97.6833
98.5687
46.3695
1783642317837259256
98.8417
anovak-vgINDEL*map_l150_m2_e0het
71.4142
70.7506
72.0905
91.6109
64126566925974
28.5714
egarrison-hhgaINDELI6_15*homalt
96.9232
97.9324
95.9347
48.1653
61101296112259222
85.7143
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
86.2084
80.6245
92.6232
55.4837
32797883252259195
75.2896
ghariani-varprowlINDELD6_15HG002compoundhethomalt
13.1465
79.1667
7.1685
47.3585
19520259232
89.5753
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.7848
99.4179
94.2876
66.3675
427025427525918
6.9498
ghariani-varprowlSNP*lowcmp_SimpleRepeat_triTR_11to50*
97.9537
99.3610
96.5858
46.1375
730847732725942
16.2162
jpowers-varprowlSNPtilowcmp_SimpleRepeat_quadTR_11to50*
98.3288
99.0403
97.6276
52.2232
106291031065825968
26.2548
jpowers-varprowlSNPtvmap_l125_m0_e0het
94.8319
95.4783
94.1941
83.6101
4202199420225965
25.0965
ltrigg-rtg1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5600
99.5848
99.5352
55.2358
554002315546325919
7.3359
cchapple-customSNP*map_l250_m1_e0*
96.0890
95.7906
96.3892
89.6069
6918304691425962
23.9382
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200het
63.1909
86.1224
49.9033
76.4142
42268258259240
92.6641
hfeng-pmm2SNP*map_l150_m2_e1het
98.9487
99.1652
98.7332
79.6403
201931702018725923
8.8803
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.1022
99.6257
98.5842
64.7104
180986818104260243
93.4615
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1022
99.6257
98.5842
64.7104
180986818104260243
93.4615
gduggal-snapplatINDEL*segduphet
76.3682
71.8281
81.5210
97.0363
1053413114726013
5.0000
gduggal-snapvardINDELD1_5map_l100_m0_e0*
87.0777
95.0174
80.3625
87.2790
82043106426071
27.3077
dgrover-gatkSNP*map_l100_m0_e0*
99.2175
99.2266
99.2084
71.3904
325872543258326057
21.9231
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
96.4687
96.5227
96.4148
36.9062
69952526992260103
39.6154
anovak-vgINDELI1_5map_l100_m0_e0*
58.1032
59.3002
56.9536
86.9940
322221344260177
68.0769
anovak-vgSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
90.5371
93.0336
88.1711
73.4829
1883141193826097
37.3077
astatham-gatkINDELI1_5*homalt
99.7125
99.8544
99.5710
55.1217
603408860345260257
98.8462
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
94.6758
93.5408
95.8387
47.4428
15931105988260204
78.4615
gduggal-bwavardINDEL*map_l100_m0_e0*
89.2130
93.9219
84.9537
89.1607
146895146826067
25.7692
gduggal-bwavardINDEL*map_l125_m1_e0het
90.3770
98.4270
83.5443
91.2553
131421132026067
25.7692
ciseli-customINDEL*map_l100_m2_e1homalt
69.4068
63.9344
75.9036
85.6497
819462819260212
81.5385
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
72.3119
89.8851
60.4863
71.9881
3914439826035
13.4615
ciseli-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
83.6651
85.4732
81.9319
70.4517
11651981179260119
45.7692
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
88.6737
96.3158
82.1551
76.7252
1281491197260253
97.3077
jpowers-varprowlINDELI16_PLUSHG002complexvar*
64.1165
56.5317
74.0519
63.2294
740569742260258
99.2308
jpowers-varprowlINDEL*map_l100_m2_e1*
91.1487
89.5367
92.8197
85.5685
33633933361260208
80.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.0767
99.4790
98.6777
68.4621
194771021947726112
4.5977
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.0767
99.4790
98.6777
68.4621
194771021947726112
4.5977
ghariani-varprowlINDELI16_PLUSHG002complexvar*
68.3069
62.1849
75.7660
65.1794
814495816261254
97.3180
gduggal-snapplatSNPtimap_l250_m2_e1*
88.7551
83.8849
94.2257
93.7237
42588184259261138
52.8736
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
45.8313
30.1293
95.7115
55.2632
414796175825261249
95.4023