PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
78501-78550 / 86044 show all
bgallagher-sentieonSNPtvmap_l100_m2_e0*
99.3603
99.6045
99.1174
68.4796
24934992493022231
13.9640
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.0821
95.4655
94.7017
82.7295
39581883968222134
60.3604
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.7965
99.5102
98.0929
39.5838
1137756114192226
2.7027
qzeng-customSNP*lowcmp_SimpleRepeat_diTR_11to50*
98.3281
98.8960
97.7666
73.6710
9585107971822262
27.9279
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
75.4208
86.9067
66.6165
52.9703
53180443222213
95.9459
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
68.3405
57.5940
84.0173
50.8840
7665641167222125
56.3063
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
62.1202
49.4937
83.3957
63.4400
117311971115222150
67.5676
gduggal-snapfbSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
97.9647
99.1698
96.7887
50.7481
668956669122241
18.4685
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
62.0310
79.1667
50.9934
69.2881
22860231222202
90.9910
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.2502
89.3757
77.9104
89.9920
8169778322270
31.5315
gduggal-bwafbSNPtilowcmp_SimpleRepeat_quadTR_11to50*
98.4458
98.9378
97.9586
49.7551
106181141065322258
26.1261
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.7882
96.6046
73.9742
88.0348
8823163122219
8.5586
raldana-dualsentieonSNP*map_l125_m0_e0het
98.3431
98.4365
98.2499
76.1833
12466198124632222
0.9009
raldana-dualsentieonSNPtimap_l150_m2_e0het
98.4890
98.6958
98.2832
77.8632
12713168127092223
1.3514
rpoplin-dv42SNP*map_l125_m1_e0het
99.0847
98.9539
99.2159
70.0178
2809529728089222128
57.6577
rpoplin-dv42SNP*map_l125_m2_e0het
99.1051
98.9733
99.2372
71.6337
2901730129011223129
57.8475
rpoplin-dv42SNP*map_l125_m2_e1het
99.1114
98.9777
99.2454
71.6791
2933730329331223129
57.8475
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
94.2348
96.1840
92.3630
49.0134
2697107269722368
30.4933
ckim-vqsrINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.3979
96.6584
94.1699
79.6348
39051353602223191
85.6502
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.8985
99.2195
98.5796
63.0301
1563712315477223202
90.5830
mlin-fermikitINDELD6_15HG002complexvarhomalt
89.0670
95.2951
83.6029
66.2028
1114551137223214
95.9641
mlin-fermikitSNP*map_l125_m1_e0het
60.7541
43.9737
98.2445
60.8741
1248515907124802238
3.5874
mlin-fermikitSNPtimap_l100_m1_e0het
71.7393
56.3489
98.6955
52.5376
1687213070168722239
4.0359
ltrigg-rtg2SNPtisegduphet
98.8445
99.5262
98.1721
86.1250
1197357119772231
0.4484
mlin-fermikitINDEL*map_l100_m1_e0homalt
76.5877
73.3496
80.1248
79.4844
900327899223196
87.8924
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.8033
97.6268
97.9804
52.5687
1081926310819223219
98.2063
bgallagher-sentieonSNPtvmap_l100_m2_e1*
99.3647
99.6084
99.1222
68.5080
25184992518022331
13.9013
asubramanian-gatkINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
71.5924
0002230
0.0000
anovak-vgINDELD1_5map_l125_m2_e0*
83.4201
85.3893
81.5397
87.6090
97616798522382
36.7713
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.7654
98.4474
99.0855
41.1980
2415938124161223213
95.5157
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3588
95.3386
99.4664
56.7621
41315202041569223143
64.1256
ltrigg-rtg1INDELI1_5*het
99.3128
98.9158
99.7130
54.8506
781848577747122356
25.1121
gduggal-bwavardSNPti*homalt
99.5201
99.0724
99.9718
15.7269
7955907449791466223186
83.4081
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.7047
98.0586
97.3534
62.7778
82331638203223199
89.2377
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
45.3666
30.7174
86.7262
43.9252
146032931457223197
88.3408
gduggal-snapfbINDELD6_15HG002compoundhethet
60.7617
44.3925
96.2540
19.2156
3804765730223211
94.6188
hfeng-pmm1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.8413
98.1645
99.5274
73.0408
4738588647174224154
68.7500
gduggal-snapvardSNP*segdup*
98.2794
97.3955
99.1795
93.1728
273367312707622472
32.1429
gduggal-snapfbSNPtimap_l250_m1_e0het
93.8477
95.0809
92.6461
86.7956
28221462822224118
52.6786
bgallagher-sentieonINDELD6_15*het
98.7535
99.4306
98.0855
62.6961
115266611476224188
83.9286
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
26.2530
22.2973
31.9149
42.5829
33115105224205
91.5179
bgallagher-sentieonSNPtimap_l125_m2_e0het
99.0858
99.3537
98.8194
75.6140
187541221875022433
14.7321
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
81.2885
83.6842
79.0262
67.0065
1113217844224167
74.5536
eyeh-varpipeINDEL*map_l100_m1_e0*
94.5716
93.6419
95.5200
92.2711
33582284776224176
78.5714
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.7727
95.5114
96.0354
50.6248
5426255542622495
42.4107
ckim-gatkINDELD6_15*het
98.7882
99.4997
98.0868
64.1200
115345811484224173
77.2321
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.8791
99.2863
98.4753
80.3955
144671041446722414
6.2500
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.8791
99.2863
98.4753
80.3955
144671041446722414
6.2500
ciseli-customINDELI1_5map_l125_m2_e0*
59.1149
52.9755
66.8639
88.9180
454403452224193
86.1607
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.7046
97.0188
92.4983
89.7173
263681276222460
26.7857