PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
78251-78300 / 86044 show all
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_diTR_11to50*
97.0524
98.8880
95.2837
61.3406
480254418220743
20.7729
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.7010
96.5880
98.8399
43.3164
1763662317637207204
98.5507
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
86.8494
93.7143
80.9217
61.7014
9846687820745
21.7391
gduggal-snapvardINDEL*map_l250_m2_e1*
77.7498
91.2913
67.7067
95.6730
3042943420749
23.6715
cchapple-customINDELI1_5HG002compoundhethomalt
69.4826
98.7842
53.5874
88.0589
3254239207207
100.0000
ciseli-customINDELD1_5map_sirenhomalt
86.4005
89.6404
83.3866
80.5952
10471211044208167
80.2885
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
89.0264
97.4704
81.9288
85.3506
12333294320828
13.4615
gduggal-bwafbINDELD16_PLUSHG002compoundhet*
82.3584
75.6514
90.3704
28.6893
17715701952208208
100.0000
gduggal-bwaplatSNP*HG002complexvarhomalt
98.2316
96.5943
99.9253
21.0137
2787469828278424208186
89.4231
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
97.1768
97.7361
96.6239
63.2047
6044140595320824
11.5385
gduggal-bwaplatINDELD1_5*homalt
94.9240
90.7227
99.5332
62.2451
44387453944353208178
85.5769
gduggal-bwaplatINDELD1_5HG002complexvarhet
91.4572
85.1047
98.8344
59.4901
17672309317637208101
48.5577
jmaeng-gatkSNP*map_l150_m0_e0*
72.2268
57.5050
97.0803
92.6384
69195113691620823
11.0577
dgrover-gatkSNPtimap_l100_m2_e1*
99.5279
99.4766
99.5792
67.5880
492262594921920850
24.0385
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
93.4915
90.6675
96.4971
60.4318
57325905730208164
78.8462
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
93.4915
90.6675
96.4971
60.4318
57325905730208164
78.8462
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.0261
98.9819
99.0704
52.1206
1118111522167208201
96.6346
ckim-vqsrSNP*map_l100_m0_e0*
70.1414
54.3558
98.8482
87.4638
1785114990178502082
0.9615
ckim-vqsrSNP*map_l100_m0_e0het
80.5244
68.0594
98.5791
88.0545
144326773144312082
0.9615
mlin-fermikitINDEL*map_l125_m2_e0*
69.1050
57.7869
85.9364
82.6204
12699271271208160
76.9231
jlack-gatkSNPtvHG002complexvarhet
99.8776
99.8932
99.8620
22.3009
15057016115049420864
30.7692
gduggal-snapplatINDELI6_15*hetalt
52.6793
36.6390
93.7008
46.4917
313354183094208167
80.2885
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
50.2079
86.2903
35.4037
86.0546
107171142083
1.4423
asubramanian-gatkINDEL*HG002compoundhethetalt
95.7396
92.5814
99.1208
52.6709
23312186823449208188
90.3846
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.4907
97.7292
99.2642
69.7423
280606522806020816
7.6923
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.4907
97.7292
99.2642
69.7423
280606522806020816
7.6923
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.0316
97.6012
98.4657
62.5780
134273301341320947
22.4880
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.0316
97.6012
98.4657
62.5780
134273301341320947
22.4880
mlin-fermikitINDELD1_5map_siren*
85.3013
78.7759
93.0054
76.3252
27807492779209185
88.5167
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
84.1057
79.3599
89.4551
69.7220
17114451773209166
79.4258
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
46.1659
40.4511
53.7611
64.5212
269396243209202
96.6507
gduggal-bwavardINDEL*map_l150_m2_e0het
88.9752
98.5651
81.0860
93.2486
8931389620944
21.0526
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
37.3529
30.5677
48.0100
79.3529
210477193209153
73.2057
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
92.9113
89.3360
96.7846
77.0025
6149734629120919
9.0909
anovak-vgINDELD1_5map_l125_m2_e0het
82.1558
88.4817
76.6741
87.9456
6768868720969
33.0144
asubramanian-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9233
98.8811
98.9655
57.0313
19973226199942095
2.3923
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6936
99.8565
97.5576
63.3125
8348128348209208
99.5215
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6936
99.8565
97.5576
63.3125
8348128348209208
99.5215
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.5494
92.7996
96.3665
60.4456
56454385543209197
94.2584
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
95.3982
98.2071
92.7456
62.2313
2684492672209198
94.7368
gduggal-snapfbSNPtvsegdup*
98.5144
99.4491
97.5971
92.7173
848547848920912
5.7416
gduggal-snapfbSNPtisegduphet
98.8224
99.3766
98.2744
91.5559
11955751196021013
6.1905
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
47.5592
44.5161
51.0490
71.9424
6986219210175
83.3333
gduggal-bwaplatSNPtimap_l100_m2_e0het
87.1494
77.7546
99.1265
83.6970
2381068122383221063
30.0000
eyeh-varpipeSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
88.9665
98.0847
81.3995
77.6081
973199192107
3.3333
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
92.5150
94.1534
90.9326
70.9811
20131252106210201
95.7143
raldana-dualsentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.6195
96.5975
98.6634
57.7294
1550154615502210201
95.7143
raldana-dualsentieonINDELI1_5*het
99.5073
99.2827
99.7331
57.9285
7847456778457210142
67.6190
rpoplin-dv42SNPtimap_siren*
99.6562
99.5227
99.7902
53.3616
9987647999868210138
65.7143
cchapple-customSNPtvHG002complexvarhet
99.7615
99.6630
99.8602
21.5432
150223508149954210146
69.5238