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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
77901-77950 / 86044 show all
jmaeng-gatkINDELD6_15HG002compoundhethet
88.9799
98.0140
81.4706
68.2342
83917831189187
98.9418
jlack-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
91.3416
88.0522
94.8864
61.9636
35084763507189176
93.1217
hfeng-pmm2SNPtimap_l125_m1_e0*
99.4105
99.4648
99.3563
71.7136
291781572917418923
12.1693
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8173
99.8685
97.7879
55.5694
8355118355189186
98.4127
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0234
99.8552
98.2053
45.9033
103421510342189184
97.3545
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
95.1579
94.9718
95.3448
39.6821
38722053871189179
94.7090
gduggal-bwavardSNPtvlowcmp_SimpleRepeat_diTR_11to50*
95.8975
95.7372
96.0584
69.6019
4649207460618980
42.3280
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
96.0835
99.8396
92.5998
68.1347
2490423651897
3.7037
eyeh-varpipeSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.1613
99.3118
99.0113
50.7900
200601391902719066
34.7368
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
96.9087
96.8629
96.9546
55.9921
5990194604919095
50.0000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
86.6541
92.2535
81.6956
79.2980
78666848190161
84.7368
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.4461
99.1228
95.8251
69.1792
4407394361190182
95.7895
bgallagher-sentieonSNPtimap_l150_m1_e0*
99.1792
99.3202
99.0387
75.5864
195781341957419036
18.9474
bgallagher-sentieonSNPtimap_l150_m2_e1het
98.8973
99.2470
98.5500
79.7478
12917981291319030
15.7895
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
13.6364
100.0000
7.3171
82.8308
150151908
4.2105
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
13.6364
100.0000
7.3171
82.8308
150151908
4.2105
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
13.6364
100.0000
7.3171
82.8308
150151908
4.2105
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
13.6364
100.0000
7.3171
82.8308
150151908
4.2105
gduggal-snapplatINDEL*map_l125_m2_e0*
81.6618
74.5446
90.2813
93.3861
1637559176519025
13.1579
gduggal-snapplatINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
23.8291
16.6493
41.8960
68.3446
16080113719058
30.5263
gduggal-snapvardINDEL*map_l250_m1_e0het
72.3286
94.2105
58.6957
95.8488
1791127019042
22.1053
gduggal-snapvardINDELD1_5map_l125_m0_e0*
85.0206
95.5645
76.5721
89.6278
4742262119041
21.5789
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
77.0774
70.4225
85.1214
55.3497
3501471087190150
78.9474
qzeng-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
97.4331
98.7825
96.1201
76.9651
470658470719022
11.5789
ckim-dragenINDEL*HG002compoundhethet
96.6766
98.1925
95.2069
77.0708
4020743774190179
94.2105
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
64.0613
59.9713
68.7500
40.2750
418279418190185
97.3684
ckim-vqsrINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.7823
92.5681
95.0288
54.7425
36372923632190179
94.2105
dgrover-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.4228
99.0946
92.0135
66.0676
2189202189190184
96.8421
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.9293
97.2651
98.6025
47.2860
1340837713406190185
97.3684
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0283
99.8745
98.1963
46.0818
103441310344190184
96.8421
hfeng-pmm3SNP*map_l100_m1_e0*
99.6620
99.5870
99.7371
63.4436
721042997209319031
16.3158
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.0097
98.4465
99.5795
70.5535
449927104499319010
5.2632
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.0097
98.4465
99.5795
70.5535
449927104499319010
5.2632
jlack-gatkINDELD1_5map_sirenhet
95.7195
99.4730
92.2389
84.5589
226512227019111
5.7592
qzeng-customINDELI6_15HG002complexvarhet
94.4892
95.7962
93.2173
56.1507
225699262519160
31.4136
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.6738
99.8792
97.4971
38.9618
7443974401913
1.5707
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
98.8869
99.6041
98.1799
38.4191
103164110303191187
97.9058
anovak-vgINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
61.6176
70.8333
54.5238
42.5445
15363229191166
86.9110
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
63.0411
72.4638
55.7870
87.7238
2007624119159
30.8901
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4101
94.7437
98.1362
57.6003
796744210057191176
92.1466
raldana-dualsentieonINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
91.8325
89.0303
94.8168
50.9778
34984313494191186
97.3822
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
96.1521
99.7642
92.7925
63.8373
25386245919110
5.2356
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_diTR_11to50*
97.5168
98.8880
96.1831
70.9711
480254481319146
24.0838
gduggal-bwaplatSNPtvmap_sirenhet
91.2244
84.4245
99.2157
78.7828
2415344562416119146
24.0838
jpowers-varprowlSNPtimap_l250_m1_e0*
95.2339
94.6932
95.7809
91.0914
4336243433619157
29.8429
ciseli-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
91.8911
98.2843
86.2787
74.9189
120321120119149
25.6545
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
97.9356
99.8106
96.1297
54.5329
474494744191190
99.4764
dgrover-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.0434
93.0771
95.0299
54.7829
36572723652191179
93.7173
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
77.9560
93.5065
66.8403
62.4021
36025385191169
88.4817
ckim-vqsrSNPtimap_l100_m2_e0het
85.8634
75.7005
99.1784
83.8574
2318174412317619212
6.2500