PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
77751-77800 / 86044 show all
jli-customSNP*segdup*
99.5966
99.8397
99.3547
89.2512
28022452802218212
6.5934
jli-customINDELD1_5HG002compoundhet*
97.1251
95.8153
98.4712
65.0788
1172351211723182174
95.6044
jli-customINDELI1_5HG002compoundhet*
96.2734
94.1810
98.4609
66.0757
1163771911643182172
94.5055
jli-customINDELI6_15*homalt
98.3861
99.6634
97.1411
49.1984
6218216218183180
98.3607
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.1115
96.7548
99.5067
50.1900
36672123036914183147
80.3279
ciseli-customINDELD1_5map_l125_m2_e1*
76.9744
72.4287
82.1289
90.9356
83831984118383
45.3552
ciseli-customINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
26.6407
17.5625
55.1471
66.3088
2321089225183170
92.8962
ckim-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3819
99.8008
98.9665
67.1777
17533351752318315
8.1967
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9495
96.9056
99.0161
33.0779
1769456518416183178
97.2678
cchapple-customSNP*segdup*
99.5856
99.8219
99.3504
91.8828
28017502798818325
13.6612
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
95.3176
99.5904
91.3963
41.9328
194581944183182
99.4536
qzeng-customSNPtvmap_l150_m0_e0*
79.1205
68.3277
93.9624
92.1942
285213222848183152
83.0601
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.5533
98.7871
98.3205
78.4263
10670131107131833
1.6393
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.0864
98.7941
97.3887
79.6107
68008368251833
1.6393
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
81.9533
97.9730
70.4362
86.4433
4359436183145
79.2350
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2283
95.5860
98.9279
54.0066
1689178016887183169
92.3497
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2283
95.5860
98.9279
54.0066
1689178016887183169
92.3497
jlack-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.0614
99.8136
98.3203
43.6922
1071220107121835
2.7322
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.2962
90.1200
96.7045
61.7457
54826015370183171
93.4426
hfeng-pmm1INDELI1_5HG002compoundhet*
96.2606
94.1648
98.4519
64.4321
1163572111638183176
96.1749
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
51.7848
41.9187
67.7249
51.1628
402557384183140
76.5027
ghariani-varprowlINDEL*map_l150_m2_e0*
91.0274
94.3892
87.8968
95.3487
132979132918352
28.4153
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
29.0076
92.6829
17.1946
91.1987
383381838
4.3716
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
92.8911
87.3497
99.1833
60.3693
2215132082222518336
19.6721
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.9654
89.6725
78.9413
89.5816
7128268618364
34.9727
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
81.6794
97.9405
70.0491
45.2509
4289428183183
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
97.7733
97.4942
98.0540
45.3637
92212379221183179
97.8142
ckim-vqsrSNPtimap_l100_m1_e0het
85.6453
75.3523
99.1953
82.9534
2256273802255718310
5.4645
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.8690
98.8710
96.8872
72.0428
5780665727184169
91.8478
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.8690
98.8710
96.8872
72.0428
5780665727184169
91.8478
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
92.2288
98.9002
86.4006
59.8278
1169131169184183
99.4565
anovak-vgINDELI1_5map_l100_m1_e0het
47.9187
38.2239
64.2023
89.2961
29748033018431
16.8478
anovak-vgINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
67.1212
72.5490
62.4490
44.0639
11142306184163
88.5870
astatham-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.5706
99.1399
92.2494
66.0177
2190192190184181
98.3696
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
77.5367
69.6429
87.4488
64.9114
12485441282184127
69.0217
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
80.1634
98.6945
67.4912
84.0788
378538218493
50.5435
ciseli-customINDELI6_15HG002complexvarhet
39.0345
26.1146
77.2559
60.9179
6151740625184138
75.0000
jlack-gatkINDEL*map_l125_m1_e0het
92.6306
98.1273
87.7170
91.3380
13102513141848
4.3478
hfeng-pmm2INDEL*HG002complexvar*
99.1003
98.4520
99.7572
57.3339
75747119175614184143
77.7174
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.5242
99.6649
93.5754
71.7749
2677926801849
4.8913
gduggal-bwafbSNP*map_l150_m0_e0*
98.2636
98.0635
98.4645
81.5621
117992331179918458
31.5217
gduggal-bwavardINDELD1_5map_l100_m1_e0*
92.6870
95.1299
90.3665
86.2223
175890172618450
27.1739
gduggal-bwavardINDELD1_5map_l100_m2_e0*
92.8526
95.1436
90.6694
86.8647
182293178818450
27.1739
gduggal-bwavardINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
33.8099
25.0000
52.2078
71.4603
209627201184169
91.8478
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
87.0247
88.6166
85.4890
87.6172
1121144108418465
35.3261
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
68.9517
64.3204
74.3017
60.0892
530294532184182
98.9130
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.4118
97.6791
97.1460
75.4876
62711496263184164
89.1304
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.4118
97.6791
97.1460
75.4876
62711496263184164
89.1304
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
82.1159
98.1982
70.5600
84.9325
4368441184107
58.1522
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
95.6108
99.3560
92.1377
74.6935
216014216818514
7.5676