PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
77401-77450 / 86044 show all
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.8292
98.5239
99.1363
69.4693
192902891928416837
22.0238
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8292
98.5239
99.1363
69.4693
192902891928416837
22.0238
egarrison-hhgaINDELI1_5HG002compoundhethomalt
78.9281
98.4802
65.8537
81.8115
3245324168152
90.4762
dgrover-gatkSNPtvmap_sirenhet
99.5269
99.6400
99.4140
62.9092
285061032850116826
15.4762
ckim-isaacINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.1246
82.0664
84.2105
65.4096
1112243896168107
63.6905
ckim-vqsrINDELD6_15HG002compoundhethet
89.9917
98.0140
83.1832
68.8202
83917831168166
98.8095
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
92.7175
97.4908
88.3898
77.5276
1321341279168162
96.4286
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
91.6966
94.8227
88.7701
73.3903
1337731328168145
86.3095
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
88.4419
96.9415
81.3126
63.0649
72923731168160
95.2381
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.4108
90.6200
98.5326
48.7374
507252511281168144
85.7143
gduggal-bwaplatSNP*map_l125_m2_e0*
75.1671
60.4306
99.4087
87.7400
28235184882824216847
27.9762
gduggal-bwaplatSNP*map_l125_m2_e1het
80.1160
67.2065
99.1643
89.4169
1992097201993416844
26.1905
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
61.2714
47.5666
86.0697
84.3397
10361142103816841
24.4048
gduggal-bwaplatINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
71.2981
57.7309
93.2011
73.4101
23001684230316853
31.5476
gduggal-bwavardSNP*HG002complexvarhomalt
98.4291
96.9651
99.9379
18.6318
2798178758270523168110
65.4762
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2969
95.1533
99.5393
51.1225
36065183736299168133
79.1667
jmaeng-gatkINDELD1_5*homalt
99.7928
99.9285
99.6576
62.5365
488913548898168166
98.8095
qzeng-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
81.1561
92.0082
72.5938
67.9226
4493944516863
37.5000
qzeng-customINDELI6_15map_siren*
71.0638
81.6393
62.9139
77.5520
249562851688
4.7619
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
92.3449
94.3042
90.4654
62.2051
1606971594168164
97.6190
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
96.0150
95.3702
96.6686
70.3632
48822374875168149
88.6905
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
89.6468
92.1537
87.2727
64.8656
115198115216898
58.3333
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
74.7342
66.9196
84.6154
62.9705
882436924168144
85.7143
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
89.6468
92.1537
87.2727
64.8656
115198115216898
58.3333
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.9747
88.1319
98.3807
75.7191
1018113711020716859
35.1190
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.9747
88.1319
98.3807
75.7191
1018113711020716859
35.1190
gduggal-snapplatSNPtvmap_l250_m2_e0het
85.9616
81.9072
90.4382
95.1114
1589351158916870
41.6667
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_triTR_11to50*
97.1636
99.0725
95.3268
47.5871
341832342716833
19.6429
hfeng-pmm1INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.1710
92.9950
95.3770
77.2463
37572833466168128
76.1905
gduggal-snapvardINDELI1_5map_l125_m2_e0*
90.3981
94.5158
86.6242
88.6067
81047108816870
41.6667
ghariani-varprowlINDEL*map_l150_m1_e0het
89.9408
97.7778
83.2669
93.2001
8361983616848
28.5714
gduggal-snapplatSNPtvmap_l250_m2_e0*
86.3687
80.4650
93.2074
94.2777
2319563231916971
42.0118
gduggal-snapvardINDELD1_5segdup*
90.1625
92.8377
87.6372
94.9594
1024791198169138
81.6568
gduggal-snapvardINDELI1_5map_l125_m2_e1*
90.4900
94.5977
86.7243
88.6844
82347110416971
42.0118
gduggal-snapplatINDEL*map_l125_m2_e0het
80.7999
75.4853
86.9195
94.1195
1050341112316924
14.2012
raldana-dualsentieonSNPtvmap_l100_m2_e0*
99.4052
99.4847
99.3259
66.9200
24904129249001695
2.9586
hfeng-pmm3SNP*map_l125_m1_e0*
99.5551
99.4838
99.6266
69.4654
450932344508716926
15.3846
anovak-vgINDEL*map_l125_m0_e0het
70.2289
68.8245
71.6918
91.8286
40418342816955
32.5444
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.0055
90.4209
93.6466
50.9768
24922642491169156
92.3077
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.8179
94.0683
97.6337
60.8078
59473756973169154
91.1243
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.8179
94.0683
97.6337
60.8078
59473756973169154
91.1243
ciseli-customINDELD1_5map_l100_m2_e0het
79.5047
74.8408
84.7885
89.8548
94031694216939
23.0769
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.3310
98.9920
95.7248
68.7757
3830393784169163
96.4497
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6979
99.1678
96.2710
69.5061
4409374363169161
95.2663
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
91.7145
87.1038
96.8405
38.5031
51677655180169126
74.5562
dgrover-gatkSNPtimap_l125_m1_e0*
99.3758
99.3284
99.4233
72.4326
291381972913416941
24.2604
qzeng-customINDELD16_PLUSmap_l100_m2_e0het
38.5430
89.5833
24.5536
86.4897
435551691
0.5917
qzeng-customSNPtvmap_l150_m0_e0het
79.7044
70.2075
92.1723
93.6869
19968471990169138
81.6568
ndellapenna-hhgaSNPtiHG002compoundhet*
98.5659
98.1119
99.0241
34.3630
1714833017148169140
82.8402
qzeng-customINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
52.5915
75.0000
40.4930
99.8509
93311151694
2.3669