PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77351-77400 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | * | map_l125_m2_e0 | homalt | 71.5076 | 67.7588 | 75.6955 | 81.9979 | 517 | 246 | 517 | 166 | 143 | 86.1446 | |
| mlin-fermikit | INDEL | D6_15 | HG002complexvar | het | 92.4085 | 90.4808 | 94.4202 | 55.5173 | 2823 | 297 | 2809 | 166 | 152 | 91.5663 | |
| dgrover-gatk | SNP | ti | map_l125_m2_e1 | het | 99.2226 | 99.3137 | 99.1317 | 77.0880 | 18956 | 131 | 18952 | 166 | 34 | 20.4819 | |
| dgrover-gatk | INDEL | D6_15 | HG002compoundhet | het | 90.2073 | 98.2477 | 83.3834 | 68.6441 | 841 | 15 | 833 | 166 | 164 | 98.7952 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.4468 | 99.1471 | 95.8038 | 68.8013 | 3836 | 33 | 3790 | 166 | 160 | 96.3855 | |
| jli-custom | SNP | ti | map_l100_m2_e0 | * | 99.4978 | 99.3362 | 99.6598 | 62.5143 | 48636 | 325 | 48634 | 166 | 50 | 30.1205 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8249 | 99.4525 | 98.2052 | 75.0047 | 9083 | 50 | 9083 | 166 | 10 | 6.0241 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8249 | 99.4525 | 98.2052 | 75.0047 | 9083 | 50 | 9083 | 166 | 10 | 6.0241 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5518 | 97.8697 | 99.2436 | 49.7895 | 21776 | 474 | 21780 | 166 | 153 | 92.1687 | |
| ckim-gatk | INDEL | D16_PLUS | * | * | 97.7762 | 97.9953 | 97.5581 | 71.4634 | 6648 | 136 | 6632 | 166 | 106 | 63.8554 | |
| ckim-gatk | SNP | ti | HG002complexvar | * | 99.5943 | 99.2243 | 99.9671 | 17.9110 | 504492 | 3944 | 504432 | 166 | 74 | 44.5783 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 41.0672 | 32.1689 | 56.7708 | 80.9901 | 221 | 466 | 218 | 166 | 160 | 96.3855 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.5070 | 99.9434 | 91.4477 | 66.7295 | 1766 | 1 | 1775 | 166 | 104 | 62.6506 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | * | 94.8302 | 95.3018 | 94.3633 | 90.2818 | 2779 | 137 | 2779 | 166 | 55 | 33.1325 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 37.3402 | 48.0263 | 30.5439 | 97.0255 | 73 | 79 | 73 | 166 | 10 | 6.0241 | |
| raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | * | 99.3984 | 99.4735 | 99.3234 | 65.0677 | 24372 | 129 | 24368 | 166 | 5 | 3.0121 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 84.5155 | 93.8346 | 76.8802 | 80.7197 | 624 | 41 | 552 | 166 | 157 | 94.5783 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e1 | * | 99.2936 | 99.2446 | 99.3427 | 66.1225 | 25092 | 191 | 25088 | 166 | 80 | 48.1928 | |
| raldana-dualsentieon | SNP | * | map_l150_m0_e0 | het | 97.9798 | 98.0605 | 97.8994 | 80.7841 | 7786 | 154 | 7783 | 167 | 2 | 1.1976 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9393 | 99.8565 | 98.0388 | 61.8965 | 8348 | 12 | 8348 | 167 | 166 | 99.4012 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9393 | 99.8565 | 98.0388 | 61.8965 | 8348 | 12 | 8348 | 167 | 166 | 99.4012 | |
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | homalt | 76.1097 | 96.5636 | 62.8062 | 73.3847 | 281 | 10 | 282 | 167 | 153 | 91.6168 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4287 | 99.1605 | 99.6983 | 57.8100 | 55164 | 467 | 55180 | 167 | 88 | 52.6946 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 68.0394 | 66.6667 | 69.4698 | 94.6639 | 2 | 1 | 380 | 167 | 40 | 23.9521 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.9692 | 75.8339 | 96.6071 | 82.4013 | 4729 | 1507 | 4755 | 167 | 52 | 31.1377 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 85.0896 | 95.8333 | 76.5120 | 54.1586 | 552 | 24 | 544 | 167 | 161 | 96.4072 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.8070 | 99.7711 | 95.9189 | 66.2738 | 3922 | 9 | 3925 | 167 | 16 | 9.5808 | |
| hfeng-pmm2 | SNP | ti | map_l100_m0_e0 | * | 99.3277 | 99.4212 | 99.2343 | 69.9178 | 21645 | 126 | 21642 | 167 | 19 | 11.3772 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002compoundhet | * | 95.3103 | 92.7251 | 98.0438 | 33.3983 | 8374 | 657 | 8370 | 167 | 162 | 97.0060 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 62.7472 | 53.2934 | 76.2784 | 60.3827 | 534 | 468 | 537 | 167 | 161 | 96.4072 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | homalt | 71.8856 | 68.2171 | 75.9712 | 82.1337 | 528 | 246 | 528 | 167 | 144 | 86.2275 | |
| qzeng-custom | SNP | * | map_l250_m0_e0 | het | 70.2798 | 60.2258 | 84.3633 | 98.3296 | 907 | 599 | 901 | 167 | 127 | 76.0479 | |
| qzeng-custom | SNP | tv | HG002complexvar | homalt | 99.2146 | 98.6185 | 99.8179 | 23.3623 | 93797 | 1314 | 91543 | 167 | 141 | 84.4311 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 78.9525 | 73.1884 | 85.7021 | 53.5402 | 303 | 111 | 1001 | 167 | 136 | 81.4371 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.3870 | 99.3850 | 93.5645 | 65.8553 | 2424 | 15 | 2428 | 167 | 12 | 7.1856 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 84.8287 | 79.2124 | 91.3021 | 39.5276 | 3681 | 966 | 1753 | 167 | 81 | 48.5030 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 66.4834 | 55.9299 | 81.9459 | 49.8917 | 415 | 327 | 758 | 167 | 160 | 95.8084 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 52.0117 | 48.8701 | 55.5851 | 61.8274 | 173 | 181 | 209 | 167 | 115 | 68.8623 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e0 | * | 85.5517 | 80.3655 | 91.4534 | 91.1012 | 1539 | 376 | 1787 | 167 | 33 | 19.7605 | |
| jli-custom | SNP | ti | map_l100_m2_e1 | * | 99.5011 | 99.3412 | 99.6614 | 62.5257 | 49159 | 326 | 49157 | 167 | 50 | 29.9401 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.7849 | 99.1019 | 98.4699 | 79.4919 | 10704 | 97 | 10747 | 167 | 2 | 1.1976 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.3750 | 99.1428 | 97.6190 | 80.4477 | 6824 | 59 | 6847 | 167 | 2 | 1.1976 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 17.4295 | 10.9553 | 42.6117 | 84.6357 | 125 | 1016 | 124 | 167 | 140 | 83.8323 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 87.6552 | 99.6678 | 78.2269 | 51.0842 | 600 | 2 | 600 | 167 | 166 | 99.4012 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 53.1268 | 90.0000 | 37.6866 | 90.4490 | 99 | 11 | 101 | 167 | 31 | 18.5629 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.5412 | 99.3311 | 95.8146 | 61.4853 | 3861 | 26 | 3846 | 168 | 74 | 44.0476 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.4582 | 91.2192 | 93.7313 | 49.9720 | 2514 | 242 | 2512 | 168 | 168 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l100_m1_e0 | * | 95.9601 | 96.4584 | 95.4668 | 83.7178 | 3459 | 127 | 3538 | 168 | 48 | 28.5714 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 42.4438 | 56.8627 | 33.8583 | 68.1704 | 87 | 66 | 86 | 168 | 147 | 87.5000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.1256 | 89.5940 | 96.9471 | 61.4582 | 5450 | 633 | 5335 | 168 | 156 | 92.8571 | |