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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
77201-77250 / 86044 show all
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7555
99.1808
98.3339
49.8381
9443789443160156
97.5000
hfeng-pmm2INDELI1_5HG002compoundhethomalt
80.1471
99.3921
67.1458
86.0378
3272327160159
99.3750
ckim-gatkINDELD1_5*homalt
99.8051
99.9366
99.6739
62.4819
488953148902160157
98.1250
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
94.3610
99.7108
89.5561
64.7005
13794137216026
16.2500
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_triTR_51to200het
32.5074
80.0000
20.3980
59.7194
401041160156
97.5000
gduggal-snapfbINDELD6_15HG002complexvarhet
75.2635
62.8205
93.8532
43.4007
196011602443160143
89.3750
mlin-fermikitSNPtisegduphet
97.7090
96.7914
98.6442
84.9489
11644386116411600
0.0000
ltrigg-rtg2SNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4714
99.5136
99.4293
48.5634
278231362787516012
7.5000
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
88.1960
96.5132
81.1986
71.1330
69225691160160
100.0000
mlin-fermikitINDELD1_5map_l100_m2_e1*
77.5709
68.5921
89.2545
77.9440
13306091329160138
86.2500
qzeng-customSNPtvsegdup*
98.3829
98.6521
98.1152
93.4371
8417115838116127
16.7702
ndellapenna-hhgaSNP*map_sirenhet
99.3524
98.8878
99.8214
53.1990
8997910128998016158
36.0248
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
84.4697
82.4873
86.5497
58.4519
9752071036161135
83.8509
mlin-fermikitINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
79.0971
72.2876
87.3228
83.3661
11064241109161148
91.9255
mlin-fermikitINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
79.0971
72.2876
87.3228
83.3661
11064241109161148
91.9255
eyeh-varpipeINDEL*map_sirenhet
96.4251
96.0958
96.7566
78.9179
43321764803161108
67.0807
ckim-vqsrSNPtvmap_l100_m1_e0het
84.0404
73.2308
98.5936
85.7766
112904127112871611
0.6211
jli-customSNP*map_l100_m0_e0het
98.8927
98.5522
99.2355
65.8743
208983072089816148
29.8137
jli-customSNP*map_l150_m1_e0*
99.1511
98.8337
99.4706
71.1384
302523573024916158
36.0248
jli-customSNP*map_l150_m2_e0het
98.8511
98.5099
99.1946
74.6204
198333001983016149
30.4348
jmaeng-gatkINDELD1_5HG002compoundhethomalt
78.1671
99.6564
64.3016
87.6742
2901290161160
99.3789
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.0496
99.4927
98.6105
40.0631
1137558114261612
1.2422
bgallagher-sentieonSNPtimap_l125_m0_e0*
98.9758
99.2086
98.7441
75.3623
126611011265916131
19.2547
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
28.7100
20.4082
48.3974
46.2069
150585151161125
77.6398
anovak-vgINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
23.7087
15.9091
46.5116
54.5317
133703140161125
77.6398
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.7578
95.2969
96.2233
58.1854
4093202410216185
52.7950
gduggal-bwavardINDEL*map_l125_m0_e0het
86.9907
98.1261
78.1250
92.7637
5761157516128
17.3913
gduggal-bwafbSNP*HG002complexvarhomalt
99.8832
99.8222
99.9441
19.8833
288062513288090161137
85.0932
gduggal-snapfbSNPtvmap_l250_m2_e0*
94.8696
95.2811
94.4616
90.2325
2746136274616155
34.1615
gduggal-snapplatINDEL*map_l125_m1_e0het
80.6812
75.2060
87.0161
93.7402
1004331107916124
14.9068
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
65.3595
55.1783
80.1480
73.4881
650528650161115
71.4286
gduggal-snapplatINDELD1_5map_l100_m1_e0*
85.3263
79.9784
91.4407
90.7363
1478370172016132
19.8758
gduggal-snapplatINDELI1_5map_l100_m2_e1*
82.3761
78.0645
87.1917
92.5152
108930610961618
4.9689
gduggal-snapvardINDELI1_5map_l125_m1_e0*
90.5689
94.8193
86.6832
88.0250
78743104816165
40.3727
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.9900
95.2557
98.7886
47.4309
1313165413129161155
96.2733
hfeng-pmm1SNP*map_l100_m1_e0*
99.5814
99.3868
99.7767
62.8958
719594447194816149
30.4348
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0660
95.3263
98.8704
48.8773
1409469114092161153
95.0311
ckim-gatkINDEL*map_l100_m2_e0*
97.0660
98.4024
95.7654
89.0665
363459364116120
12.4224
ckim-gatkINDEL*map_l100_m2_e1*
97.0874
98.3759
95.8323
89.0990
369561370216120
12.4224
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
91.6583
85.8616
98.2945
30.7003
899414819279161143
88.8199
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
38.3260
42.4390
34.9398
82.2902
8711887162148
91.3580
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
38.3260
42.4390
34.9398
82.2902
8711887162148
91.3580
ckim-dragenSNPtimap_l250_m2_e1*
97.3249
97.8132
96.8415
89.7690
4965111496716220
12.3457
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
67.4506
68.3983
66.5289
66.7811
316146322162105
64.8148
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
82.7974
80.3556
85.3922
44.8533
949232947162161
99.3827
jli-customSNP*map_l150_m2_e1het
98.8617
98.5267
99.1989
74.7124
200633002006016249
30.2469
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
91.9790
96.8591
87.5672
69.0278
1141371141162155
95.6790
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
78.1075
64.7471
98.4152
46.2255
10816588910060162132
81.4815
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
54.0093
51.1111
57.2559
47.5069
6966217162144
88.8889
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3248
99.5674
99.0833
60.5130
17492761751016212
7.4074