PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
77051-77100 / 86044 show all
jmaeng-gatkINDEL*map_l100_m2_e0*
96.9371
97.9962
95.9006
89.1934
361974362615521
13.5484
jmaeng-gatkINDEL*map_l100_m2_e1*
96.9607
97.9766
95.9656
89.2269
368076368715521
13.5484
anovak-vgSNP*map_l100_m2_e1homalt
91.8309
85.3756
99.3422
61.4163
23731406523410155133
85.8065
astatham-gatkINDELD1_5*homalt
99.8143
99.9448
99.6841
62.4034
488992748904155152
98.0645
asubramanian-gatkINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
0.0000
100.0000
0.0000
78.5021
1001550
0.0000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
98.4953
98.4031
98.5877
57.4464
109071771082015536
23.2258
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
65.3486
79.2683
55.5874
80.4810
19551194155150
96.7742
ghariani-varprowlINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
36.8301
26.7943
58.8859
77.4791
224612222155153
98.7097
gduggal-snapfbINDELI1_5map_siren*
95.6890
96.4725
94.9180
82.9590
2899106289515539
25.1613
ckim-vqsrSNPtimap_l125_m2_e0*
70.8577
55.1491
99.0796
88.2228
1668713571166851555
3.2258
dgrover-gatkINDELD16_PLUS**
97.8781
98.0395
97.7172
70.6733
66511336635155103
66.4516
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.9555
98.7078
99.2044
76.2044
193262531932615519
12.2581
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.9555
98.7078
99.2044
76.2044
193262531932615519
12.2581
egarrison-hhgaSNP*HG002compoundhet*
98.8848
98.3812
99.3937
39.7483
2540441825408155114
73.5484
dgrover-gatkSNP*map_l150_m0_e0*
98.7537
98.7949
98.7125
82.2666
118871451188415529
18.7097
ckim-isaacINDELI6_15*homalt
87.6777
79.9968
96.9903
41.8473
499112484995155121
78.0645
eyeh-varpipeSNPtv*homalt
99.9630
99.9676
99.9583
19.9401
37700112237116515557
36.7742
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
91.4222
100.0000
84.1998
71.2990
85508261553
1.9355
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
91.8485
99.5662
85.2412
78.3800
918490115695
60.8974
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_51to200*
15.3418
13.9640
17.0213
57.0776
3119132156154
98.7179
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.3454
90.6386
94.1176
50.5132
24982582496156154
98.7179
jmaeng-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.3937
99.6425
99.1462
42.0410
1811865181151562
1.2821
qzeng-customINDELD1_5HG002compoundhethomalt
77.4248
96.9072
64.4647
67.2143
2829283156151
96.7949
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
96.0419
95.4134
96.6787
32.0948
45352184541156154
98.7179
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
95.6210
97.3818
93.9229
89.2161
230662241115650
32.0513
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
91.0894
90.4040
91.7852
74.4242
19692091743156147
94.2308
ltrigg-rtg2SNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
97.2799
97.7540
96.8105
66.5390
465710747351565
3.2051
mlin-fermikitINDELD1_5map_l100_m1_e0*
76.7469
67.5325
88.8730
76.4647
12486001246156136
87.1795
hfeng-pmm2SNP*map_l150_m0_e0het
98.4569
98.8665
98.0507
83.2717
785090784715611
7.0513
jlack-gatkINDEL*map_l150_m1_e0*
93.5297
98.0568
89.4022
92.0707
13122613161569
5.7692
jlack-gatkINDELD1_5map_l100_m1_e0*
95.2221
98.5390
92.1212
86.6783
182127182415611
7.0513
rpoplin-dv42INDEL**hetalt
95.6899
92.3010
99.3372
57.2847
23294194323381156151
96.7949
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9263
98.3656
99.4933
72.9052
306345093063415620
12.8205
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9263
98.3656
99.4933
72.9052
306345093063415620
12.8205
ckim-vqsrSNPtimap_l125_m2_e1*
71.0090
55.3306
99.0860
88.2132
1691413655169121565
3.2051
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.6132
95.1837
98.0864
57.9273
80044057996156101
64.7436
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.0742
88.4708
95.9835
76.8106
3668478372815682
52.5641
bgallagher-sentieonSNPtvmap_l150_m1_e0*
98.9592
99.3402
98.5810
76.0604
10840721083815625
16.0256
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_51to200het
85.6343
78.9796
93.5135
45.7111
3871032249156148
94.8718
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
55.4070
49.8753
62.3188
47.9245
200201258156121
77.5641
anovak-vgINDELD1_5map_l150_m2_e1het
81.1378
88.3142
75.0400
90.1683
4616146915658
37.1795
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200het
42.2961
66.6667
30.9735
85.3532
34177015639
25.0000
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
30.6069
35.1515
27.1028
96.8469
58107581567
4.4872
gduggal-snapplatINDELI1_5map_l100_m1_e0*
82.4097
78.1927
87.1074
91.8447
104729210541568
5.1282
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
81.9563
92.6437
73.4797
72.5162
4033243515714
8.9172
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
32.7668
34.5725
31.1404
85.7143
931767115740
25.4777
gduggal-snapvardINDELI1_5map_l125_m1_e0het
88.6113
98.7654
80.3504
90.3081
480664215763
40.1274
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
3.6810
100.0000
1.8750
78.4657
3031573
1.9108
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
3.6810
100.0000
1.8750
78.4657
3031573
1.9108
jlack-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
52.6631
81.4516
38.9105
99.8116
101231001575
3.1847