PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75451-75500 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 78.5045 | 69.6510 | 89.9365 | 50.9342 | 918 | 400 | 992 | 111 | 111 | 100.0000 | |
| gduggal-bwafb | SNP | * | HG002compoundhet | homalt | 99.2787 | 99.5826 | 98.9767 | 38.6655 | 10737 | 45 | 10736 | 111 | 91 | 81.9820 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9550 | 99.7815 | 94.2842 | 72.3244 | 1827 | 4 | 1831 | 111 | 5 | 4.5045 | |
| eyeh-varpipe | INDEL | D6_15 | HG002compoundhet | hetalt | 46.3719 | 30.5239 | 96.4480 | 28.8641 | 2488 | 5663 | 3014 | 111 | 110 | 99.0991 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | het | 80.7395 | 68.0935 | 99.1541 | 88.7617 | 12997 | 6090 | 13011 | 111 | 31 | 27.9279 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | * | 91.1702 | 96.9317 | 86.0553 | 90.3175 | 695 | 22 | 685 | 111 | 13 | 11.7117 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | * | 91.6113 | 96.9856 | 86.8014 | 90.8198 | 740 | 23 | 730 | 111 | 13 | 11.7117 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | het | 89.6534 | 98.6590 | 82.1543 | 92.0895 | 515 | 7 | 511 | 111 | 13 | 11.7117 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3984 | 98.6070 | 98.1907 | 77.5143 | 6017 | 85 | 6024 | 111 | 100 | 90.0901 | |
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | het | 98.5915 | 98.7763 | 98.4075 | 76.8439 | 6861 | 85 | 6859 | 111 | 1 | 0.9009 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 44.8523 | 34.5009 | 64.0777 | 67.1975 | 197 | 374 | 198 | 111 | 78 | 70.2703 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6995 | 99.7594 | 99.6396 | 71.1645 | 30687 | 74 | 30687 | 111 | 109 | 98.1982 | |
| ghariani-varprowl | INDEL | * | map_l125_m0_e0 | het | 90.1652 | 97.6150 | 83.7719 | 93.3586 | 573 | 14 | 573 | 111 | 27 | 24.3243 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | het | 93.1615 | 93.6255 | 92.7022 | 90.7097 | 1410 | 96 | 1410 | 111 | 38 | 34.2342 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | * | 80.0482 | 97.8378 | 67.7326 | 95.1053 | 181 | 4 | 233 | 111 | 18 | 16.2162 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m1_e0 | het | 87.4266 | 98.6622 | 78.4884 | 92.1449 | 295 | 4 | 405 | 111 | 38 | 34.2342 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 67.7557 | 87.7049 | 55.2000 | 61.5975 | 107 | 15 | 138 | 112 | 75 | 66.9643 | |
| gduggal-snapvard | SNP | ti | segdup | het | 98.2336 | 97.4314 | 99.0491 | 94.0407 | 11721 | 309 | 11666 | 112 | 14 | 12.5000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.2684 | 99.7868 | 80.7560 | 85.2172 | 468 | 1 | 470 | 112 | 74 | 66.0714 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | het | 96.3818 | 97.5406 | 95.2502 | 79.8220 | 2221 | 56 | 2246 | 112 | 13 | 11.6071 | |
| gduggal-snapfb | INDEL | I1_5 | map_siren | het | 94.9188 | 96.2522 | 93.6219 | 81.5720 | 1618 | 63 | 1644 | 112 | 17 | 15.1786 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m1_e0 | * | 90.5611 | 95.6764 | 85.9649 | 90.8486 | 686 | 31 | 686 | 112 | 20 | 17.8571 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e0 | het | 98.8320 | 99.2002 | 98.4666 | 81.2986 | 7194 | 58 | 7192 | 112 | 20 | 17.8571 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e1 | het | 98.8473 | 99.2107 | 98.4865 | 81.3098 | 7290 | 58 | 7288 | 112 | 20 | 17.8571 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 62.3092 | 51.9728 | 77.7778 | 57.5400 | 382 | 353 | 392 | 112 | 106 | 94.6429 | |
| egarrison-hhga | INDEL | I6_15 | HG002complexvar | * | 96.2019 | 94.8456 | 97.5976 | 55.0867 | 4545 | 247 | 4550 | 112 | 73 | 65.1786 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3357 | 98.9921 | 99.6817 | 59.1116 | 35062 | 357 | 35070 | 112 | 48 | 42.8571 | |
| ckim-isaac | INDEL | D6_15 | * | hetalt | 90.6237 | 83.9246 | 98.4851 | 33.2460 | 6860 | 1314 | 7281 | 112 | 99 | 88.3929 | |
| ckim-vqsr | SNP | ti | map_l150_m1_e0 | * | 65.9997 | 49.5333 | 98.8657 | 90.7313 | 9764 | 9948 | 9762 | 112 | 2 | 1.7857 | |
| dgrover-gatk | INDEL | D1_5 | HG002compoundhet | het | 96.0763 | 98.4375 | 93.8258 | 79.0071 | 1701 | 27 | 1702 | 112 | 111 | 99.1071 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.3491 | 87.7265 | 97.4860 | 57.2867 | 4260 | 596 | 4343 | 112 | 72 | 64.2857 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.5426 | 99.4455 | 97.6559 | 38.3006 | 4663 | 26 | 4666 | 112 | 1 | 0.8929 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | het | 74.2630 | 62.0134 | 92.5433 | 78.0056 | 1386 | 849 | 1390 | 112 | 68 | 60.7143 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 48.0237 | 81.0651 | 34.1176 | 68.8073 | 137 | 32 | 58 | 112 | 111 | 99.1071 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 77.4922 | 85.9848 | 70.5263 | 85.7250 | 227 | 37 | 268 | 112 | 12 | 10.7143 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 66.9540 | 81.9672 | 56.5891 | 68.9157 | 50 | 11 | 146 | 112 | 91 | 81.2500 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.6340 | 97.1321 | 98.1411 | 72.4105 | 5927 | 175 | 5913 | 112 | 49 | 43.7500 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.0843 | 97.2973 | 87.4016 | 37.3944 | 684 | 19 | 777 | 112 | 107 | 95.5357 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.7166 | 90.1734 | 93.3134 | 34.6469 | 1560 | 170 | 1563 | 112 | 110 | 98.2143 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 44.2166 | 52.6316 | 38.1215 | 75.7697 | 70 | 63 | 69 | 112 | 110 | 98.2143 | |
| jli-custom | SNP | ti | map_l125_m1_e0 | * | 99.3574 | 99.1001 | 99.6162 | 66.6526 | 29071 | 264 | 29069 | 112 | 41 | 36.6071 | |
| jli-custom | SNP | tv | map_l100_m1_e0 | * | 99.4197 | 99.2980 | 99.5417 | 62.1631 | 24329 | 172 | 24328 | 112 | 30 | 26.7857 | |
| astatham-gatk | SNP | * | map_l100_m2_e1 | * | 92.0052 | 85.3219 | 99.8246 | 70.5612 | 63767 | 10970 | 63756 | 112 | 52 | 46.4286 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.0947 | 93.5620 | 94.6334 | 73.4309 | 1991 | 137 | 1975 | 112 | 96 | 85.7143 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.2962 | 93.5743 | 97.0826 | 62.0727 | 3728 | 256 | 3727 | 112 | 102 | 91.0714 | |
| bgallagher-sentieon | SNP | ti | HG002complexvar | * | 99.9558 | 99.9337 | 99.9780 | 17.4939 | 508099 | 337 | 508035 | 112 | 53 | 47.3214 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.0792 | 98.2071 | 95.9770 | 63.3202 | 2684 | 49 | 2672 | 112 | 106 | 94.6429 | |
| anovak-vg | SNP | ti | func_cds | * | 98.6277 | 98.0852 | 99.1763 | 27.7317 | 13523 | 264 | 13486 | 112 | 79 | 70.5357 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.9582 | 94.9341 | 97.0045 | 63.7624 | 3673 | 196 | 3627 | 112 | 107 | 95.5357 | |
| rpoplin-dv42 | INDEL | I16_PLUS | * | het | 94.8292 | 93.8926 | 95.7847 | 65.3540 | 2552 | 166 | 2545 | 112 | 105 | 93.7500 | |