PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75001-75050 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1429 | 97.6886 | 98.6014 | 32.5284 | 7185 | 170 | 7191 | 102 | 76 | 74.5098 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3283 | 99.2191 | 99.4377 | 37.1644 | 18041 | 142 | 18038 | 102 | 2 | 1.9608 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | * | 98.2211 | 98.4437 | 97.9996 | 88.4416 | 4997 | 79 | 4997 | 102 | 3 | 2.9412 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.4857 | 97.5614 | 99.4277 | 64.2143 | 17723 | 443 | 17720 | 102 | 87 | 85.2941 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.4857 | 97.5614 | 99.4277 | 64.2143 | 17723 | 443 | 17720 | 102 | 87 | 85.2941 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.3796 | 95.3528 | 97.4288 | 66.7644 | 3878 | 189 | 3865 | 102 | 94 | 92.1569 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.2450 | 95.6628 | 96.8343 | 65.6357 | 3132 | 142 | 3120 | 102 | 100 | 98.0392 | |
| asubramanian-gatk | INDEL | D6_15 | * | hetalt | 96.0019 | 93.4549 | 98.6916 | 34.2221 | 7639 | 535 | 7694 | 102 | 98 | 96.0784 | |
| asubramanian-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1774 | 98.9300 | 99.4261 | 58.2999 | 17660 | 191 | 17671 | 102 | 10 | 9.8039 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.3699 | 99.0104 | 93.8665 | 85.7412 | 1801 | 18 | 1561 | 102 | 70 | 68.6275 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.3699 | 99.0104 | 93.8665 | 85.7412 | 1801 | 18 | 1561 | 102 | 70 | 68.6275 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.9665 | 94.7838 | 95.1498 | 73.0488 | 2017 | 111 | 2001 | 102 | 87 | 85.2941 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.4962 | 98.9130 | 94.1946 | 61.4016 | 1729 | 19 | 1655 | 102 | 27 | 26.4706 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 72.2144 | 57.9892 | 95.6871 | 78.8764 | 2261 | 1638 | 2263 | 102 | 21 | 20.5882 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 77.7807 | 65.3066 | 96.1451 | 67.6686 | 2545 | 1352 | 2544 | 102 | 31 | 30.3922 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.8694 | 87.8316 | 96.2963 | 86.2286 | 2649 | 367 | 2652 | 102 | 8 | 7.8431 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | * | 81.3480 | 68.8368 | 99.4174 | 84.4949 | 17404 | 7879 | 17405 | 102 | 20 | 19.6078 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | het | 85.4123 | 75.0157 | 99.1542 | 86.7876 | 11956 | 3982 | 11958 | 102 | 20 | 19.6078 | |
| gduggal-bwavard | INDEL | * | HG002complexvar | homalt | 95.0919 | 90.9942 | 99.5761 | 40.5691 | 24593 | 2434 | 23958 | 102 | 66 | 64.7059 | |
| eyeh-varpipe | INDEL | D1_5 | HG002complexvar | hetalt | 66.7172 | 51.5533 | 94.5191 | 75.2098 | 697 | 655 | 1759 | 102 | 101 | 99.0196 | |
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | * | 82.3699 | 93.4426 | 73.6434 | 96.1257 | 285 | 20 | 285 | 102 | 15 | 14.7059 | |
| hfeng-pmm1 | SNP | * | map_l100_m0_e0 | het | 99.2124 | 98.9106 | 99.5159 | 69.6159 | 20974 | 231 | 20970 | 102 | 27 | 26.4706 | |
| hfeng-pmm1 | SNP | ti | map_l100_m1_e0 | * | 99.5693 | 99.3532 | 99.7862 | 62.2569 | 47621 | 310 | 47614 | 102 | 32 | 31.3725 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002compoundhet | * | 95.5863 | 92.3089 | 99.1049 | 60.5859 | 11294 | 941 | 11293 | 102 | 95 | 93.1373 | |
| hfeng-pmm1 | INDEL | D16_PLUS | * | het | 97.0973 | 97.6575 | 96.5435 | 74.8637 | 3085 | 74 | 2849 | 102 | 61 | 59.8039 | |
| ltrigg-rtg1 | SNP | * | func_cds | * | 99.6647 | 99.8898 | 99.4405 | 22.8252 | 18130 | 20 | 18129 | 102 | 1 | 0.9804 | |
| ltrigg-rtg1 | SNP | * | func_cds | het | 99.4644 | 99.8387 | 99.0928 | 23.2229 | 11143 | 18 | 11142 | 102 | 1 | 0.9804 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | * | 92.1981 | 91.1068 | 93.3159 | 87.0820 | 1424 | 139 | 1424 | 102 | 64 | 62.7451 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7867 | 98.9531 | 98.6209 | 43.1645 | 7278 | 77 | 7294 | 102 | 43 | 42.1569 | |
| jpowers-varprowl | SNP | tv | map_l250_m0_e0 | * | 90.6683 | 93.9869 | 87.5761 | 95.2078 | 719 | 46 | 719 | 102 | 12 | 11.7647 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.6957 | 98.3216 | 99.0726 | 47.6211 | 10896 | 186 | 10896 | 102 | 98 | 96.0784 | |
| jmaeng-gatk | INDEL | D1_5 | map_siren | * | 98.0661 | 98.9799 | 97.1690 | 84.7576 | 3493 | 36 | 3501 | 102 | 10 | 9.8039 | |
| ckim-gatk | INDEL | * | map_l150_m2_e1 | * | 95.7468 | 98.3322 | 93.2939 | 93.1304 | 1415 | 24 | 1419 | 102 | 10 | 9.8039 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.2099 | 99.2021 | 87.9004 | 61.3834 | 746 | 6 | 741 | 102 | 102 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_siren | het | 69.4186 | 71.7857 | 67.2026 | 85.2327 | 201 | 79 | 209 | 102 | 21 | 20.5882 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | * | 53.8462 | 51.5504 | 56.3559 | 88.4200 | 133 | 125 | 133 | 103 | 60 | 58.2524 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 54.3651 | 51.8939 | 57.0833 | 88.8786 | 137 | 127 | 137 | 103 | 60 | 58.2524 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 92.5840 | 86.9698 | 98.9730 | 26.4574 | 9658 | 1447 | 9926 | 103 | 93 | 90.2913 | |
| ckim-dragen | SNP | ti | func_cds | * | 99.6097 | 99.9637 | 99.2582 | 28.1352 | 13782 | 5 | 13782 | 103 | 1 | 0.9709 | |
| ckim-dragen | SNP | ti | func_cds | het | 99.3804 | 99.9647 | 98.8029 | 32.2466 | 8501 | 3 | 8501 | 103 | 1 | 0.9709 | |
| anovak-vg | INDEL | * | map_l150_m0_e0 | het | 69.8552 | 68.9150 | 70.8215 | 94.2917 | 235 | 106 | 250 | 103 | 35 | 33.9806 | |
| anovak-vg | INDEL | D1_5 | map_l125_m0_e0 | * | 80.9550 | 82.0565 | 79.8828 | 90.2159 | 407 | 89 | 409 | 103 | 43 | 41.7476 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 64.4828 | 0 | 0 | 0 | 103 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.2696 | 96.9214 | 93.6732 | 86.2372 | 1763 | 56 | 1525 | 103 | 74 | 71.8447 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.2696 | 96.9214 | 93.6732 | 86.2372 | 1763 | 56 | 1525 | 103 | 74 | 71.8447 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.2615 | 97.1904 | 89.6378 | 74.6299 | 934 | 27 | 891 | 103 | 93 | 90.2913 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.2061 | 97.3623 | 97.0504 | 40.0412 | 3359 | 91 | 3389 | 103 | 49 | 47.5728 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.0166 | 98.1818 | 90.1905 | 68.4305 | 810 | 15 | 947 | 103 | 102 | 99.0291 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.0166 | 98.1818 | 90.1905 | 68.4305 | 810 | 15 | 947 | 103 | 102 | 99.0291 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 80.9804 | 74.1455 | 89.2034 | 78.7338 | 846 | 295 | 851 | 103 | 101 | 98.0583 | |