PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74251-74300 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | tv | map_l250_m2_e0 | * | 97.2121 | 97.3976 | 97.0273 | 89.9044 | 2807 | 75 | 2807 | 86 | 12 | 13.9535 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.1495 | 99.5808 | 98.7219 | 57.2055 | 6651 | 28 | 6643 | 86 | 83 | 96.5116 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3332 | 97.2524 | 99.4383 | 69.4992 | 15149 | 428 | 15226 | 86 | 78 | 90.6977 | |
| ciseli-custom | INDEL | * | map_l250_m2_e0 | * | 57.9713 | 51.3595 | 66.5370 | 97.5315 | 170 | 161 | 171 | 86 | 44 | 51.1628 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.7834 | 99.1728 | 92.6180 | 69.4386 | 1079 | 9 | 1079 | 86 | 79 | 91.8605 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.2285 | 93.2851 | 97.2547 | 53.8987 | 903 | 65 | 3082 | 87 | 61 | 70.1149 | |
| ckim-dragen | SNP | * | map_l250_m0_e0 | * | 96.2167 | 96.4871 | 95.9478 | 93.2896 | 2060 | 75 | 2060 | 87 | 9 | 10.3448 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 35.5556 | 100.0000 | 21.6216 | 96.1973 | 1 | 0 | 24 | 87 | 22 | 25.2874 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 81.4677 | 70.5559 | 96.3720 | 80.0416 | 2310 | 964 | 2311 | 87 | 48 | 55.1724 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 15.7742 | 14.0845 | 17.9245 | 45.0777 | 20 | 122 | 19 | 87 | 86 | 98.8506 | |
| gduggal-bwafb | INDEL | * | HG002complexvar | hetalt | 85.9574 | 79.3998 | 93.6957 | 80.8679 | 2937 | 762 | 1293 | 87 | 84 | 96.5517 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.8252 | 97.9371 | 97.7135 | 64.8985 | 3798 | 80 | 3718 | 87 | 10 | 11.4943 | |
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | het | 97.3551 | 97.7489 | 96.9644 | 82.8486 | 2779 | 64 | 2779 | 87 | 20 | 22.9885 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002complexvar | het | 50.6283 | 38.3459 | 74.4868 | 43.8221 | 255 | 410 | 254 | 87 | 87 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | het | 74.0589 | 60.6050 | 95.1907 | 94.3590 | 1723 | 1120 | 1722 | 87 | 5 | 5.7471 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m1_e0 | het | 94.3765 | 95.7816 | 93.0120 | 85.5736 | 1158 | 51 | 1158 | 87 | 61 | 70.1149 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | het | 98.7345 | 97.7868 | 99.7007 | 62.3395 | 28984 | 656 | 28985 | 87 | 12 | 13.7931 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0155 | 96.3678 | 99.7204 | 49.6879 | 30830 | 1162 | 31028 | 87 | 75 | 86.2069 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | het | 94.5416 | 98.0519 | 91.2738 | 94.1930 | 906 | 18 | 910 | 87 | 6 | 6.8966 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | * | 93.9359 | 94.3241 | 93.5508 | 86.7120 | 1263 | 76 | 1262 | 87 | 31 | 35.6322 | |
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.4028 | 99.6568 | 95.2485 | 71.4664 | 1742 | 6 | 1744 | 87 | 49 | 56.3218 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | het | 85.0662 | 81.8182 | 88.5827 | 93.2602 | 594 | 132 | 675 | 87 | 20 | 22.9885 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 31.6644 | 21.5926 | 59.3458 | 76.4835 | 141 | 512 | 127 | 87 | 36 | 41.3793 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 88.3125 | 86.2357 | 90.4918 | 71.6894 | 827 | 132 | 828 | 87 | 68 | 78.1609 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 81.9397 | 72.4014 | 94.3726 | 87.2379 | 1010 | 385 | 1459 | 87 | 16 | 18.3908 | |
| mlin-fermikit | INDEL | I16_PLUS | * | homalt | 93.7946 | 93.2095 | 94.3871 | 67.1262 | 1455 | 106 | 1463 | 87 | 84 | 96.5517 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6109 | 99.4340 | 97.8014 | 61.3838 | 3865 | 22 | 3870 | 87 | 83 | 95.4023 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.9937 | 93.4578 | 98.6711 | 50.7411 | 6457 | 452 | 6460 | 87 | 83 | 95.4023 | |
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | het | 98.8184 | 98.6930 | 98.9442 | 74.5223 | 8155 | 108 | 8153 | 87 | 54 | 62.0690 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 26.5613 | 34.4262 | 21.6216 | 60.9155 | 21 | 40 | 24 | 87 | 40 | 45.9770 | |
| bgallagher-sentieon | INDEL | I1_5 | HG002compoundhet | het | 94.0512 | 98.4706 | 90.0115 | 86.3970 | 837 | 13 | 784 | 87 | 85 | 97.7011 | |
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | het | 97.9977 | 99.0151 | 97.0010 | 83.2079 | 2815 | 28 | 2814 | 87 | 7 | 8.0460 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.7925 | 91.4973 | 96.2058 | 58.9950 | 2206 | 205 | 2206 | 87 | 83 | 95.4023 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.4067 | 97.3876 | 99.4474 | 67.5648 | 15657 | 420 | 15658 | 87 | 73 | 83.9080 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.4067 | 97.3876 | 99.4474 | 67.5648 | 15657 | 420 | 15658 | 87 | 73 | 83.9080 | |
| asubramanian-gatk | INDEL | D6_15 | HG002compoundhet | hetalt | 96.1166 | 93.5100 | 98.8728 | 25.0680 | 7622 | 529 | 7631 | 87 | 83 | 95.4023 | |
| hfeng-pmm3 | SNP | ti | map_l100_m0_e0 | * | 99.5150 | 99.4304 | 99.5997 | 67.5390 | 21647 | 124 | 21644 | 87 | 13 | 14.9425 | |
| hfeng-pmm3 | SNP | ti | map_l150_m1_e0 | * | 99.4898 | 99.4217 | 99.5579 | 74.0428 | 19598 | 114 | 19594 | 87 | 14 | 16.0920 | |
| hfeng-pmm2 | SNP | ti | HG002complexvar | * | 99.8914 | 99.8002 | 99.9829 | 17.3851 | 507420 | 1016 | 507361 | 87 | 38 | 43.6782 | |
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | het | 98.4153 | 98.7957 | 98.0379 | 79.2988 | 4348 | 53 | 4347 | 87 | 9 | 10.3448 | |
| hfeng-pmm3 | SNP | tv | map_siren | * | 99.7604 | 99.7104 | 99.8104 | 56.7354 | 45797 | 133 | 45789 | 87 | 15 | 17.2414 | |
| jlack-gatk | INDEL | D1_5 | segdup | het | 93.5227 | 98.8439 | 88.7451 | 96.2758 | 684 | 8 | 686 | 87 | 3 | 3.4483 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5102 | 97.4083 | 99.6374 | 38.9351 | 23904 | 636 | 23906 | 87 | 70 | 80.4598 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.9278 | 95.3271 | 94.5317 | 83.5556 | 1734 | 85 | 1504 | 87 | 55 | 63.2184 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.9278 | 95.3271 | 94.5317 | 83.5556 | 1734 | 85 | 1504 | 87 | 55 | 63.2184 | |
| egarrison-hhga | SNP | * | map_l125_m2_e0 | * | 99.4490 | 99.0882 | 99.8124 | 70.5171 | 46297 | 426 | 46297 | 87 | 41 | 47.1264 | |
| egarrison-hhga | SNP | ti | segdup | * | 99.6343 | 99.7134 | 99.5554 | 88.9440 | 19481 | 56 | 19481 | 87 | 25 | 28.7356 | |
| ckim-isaac | SNP | * | map_l100_m1_e0 | * | 78.4897 | 64.6727 | 99.8146 | 63.0504 | 46825 | 25578 | 46832 | 87 | 22 | 25.2874 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0301 | 99.8948 | 98.1803 | 50.4508 | 4748 | 5 | 4748 | 88 | 87 | 98.8636 | |
| egarrison-hhga | SNP | * | map_l125_m2_e1 | * | 99.4493 | 99.0890 | 99.8122 | 70.5609 | 46772 | 430 | 46772 | 88 | 41 | 46.5909 | |