PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74101-74150 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | * | map_l150_m2_e1 | * | 91.4615 | 84.4862 | 99.6922 | 80.1245 | 27213 | 4997 | 27207 | 84 | 40 | 47.6190 | |
| astatham-gatk | SNP | ti | map_siren | * | 94.0656 | 88.8705 | 99.9059 | 56.9785 | 89186 | 11169 | 89171 | 84 | 46 | 54.7619 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.1082 | 92.7162 | 93.5035 | 64.4487 | 1222 | 96 | 1209 | 84 | 76 | 90.4762 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e1 | * | 98.6646 | 98.9756 | 98.3555 | 89.6132 | 5024 | 52 | 5024 | 84 | 19 | 22.6190 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | het | 93.4708 | 92.8977 | 94.0510 | 85.3951 | 1308 | 100 | 1328 | 84 | 14 | 16.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 77.8626 | 66.2338 | 94.4444 | 82.1887 | 1428 | 728 | 1428 | 84 | 26 | 30.9524 | |
| gduggal-bwaplat | INDEL | D16_PLUS | * | * | 82.9287 | 71.7129 | 98.3034 | 72.8727 | 4865 | 1919 | 4867 | 84 | 65 | 77.3810 | |
| gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | het | 92.7842 | 87.3832 | 98.8969 | 23.0186 | 748 | 108 | 7531 | 84 | 67 | 79.7619 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.6607 | 91.0166 | 98.6088 | 31.6968 | 6079 | 600 | 5954 | 84 | 72 | 85.7143 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | het | 88.6305 | 99.1304 | 80.1418 | 91.5077 | 342 | 3 | 339 | 84 | 8 | 9.5238 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.4816 | 88.0131 | 86.9565 | 72.4315 | 536 | 73 | 560 | 84 | 71 | 84.5238 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0820 | 99.9158 | 98.2619 | 50.9937 | 4749 | 4 | 4749 | 84 | 83 | 98.8095 | |
| ckim-vqsr | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.5289 | 99.3598 | 99.6985 | 56.1737 | 27780 | 179 | 27779 | 84 | 9 | 10.7143 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9925 | 98.5647 | 99.4241 | 53.5139 | 14558 | 212 | 14501 | 84 | 48 | 57.1429 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 89.7782 | 82.5984 | 98.3250 | 32.1288 | 4870 | 1026 | 4931 | 84 | 71 | 84.5238 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 89.7782 | 82.5984 | 98.3250 | 32.1288 | 4870 | 1026 | 4931 | 84 | 71 | 84.5238 | |
| dgrover-gatk | SNP | ti | map_l150_m0_e0 | het | 98.5705 | 98.7836 | 98.3584 | 84.6267 | 5035 | 62 | 5033 | 84 | 15 | 17.8571 | |
| egarrison-hhga | INDEL | * | map_l100_m1_e0 | * | 97.4160 | 97.1835 | 97.6497 | 97.4833 | 3485 | 101 | 3490 | 84 | 39 | 46.4286 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.6592 | 93.9050 | 91.4460 | 61.1858 | 909 | 59 | 898 | 84 | 35 | 41.6667 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | het | 94.1953 | 98.2716 | 90.4437 | 90.5024 | 796 | 14 | 795 | 84 | 29 | 34.5238 | |
| ghariani-varprowl | INDEL | I1_5 | segdup | het | 91.7878 | 98.1413 | 86.2069 | 96.5587 | 528 | 10 | 525 | 84 | 56 | 66.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 2.6388 | 1.3951 | 24.3243 | 79.2910 | 25 | 1767 | 27 | 84 | 48 | 57.1429 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 4.6990 | 2.6273 | 22.2222 | 79.1506 | 16 | 593 | 24 | 84 | 48 | 57.1429 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 90.2936 | 98.1609 | 83.5938 | 71.7906 | 427 | 8 | 428 | 84 | 76 | 90.4762 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 17.7419 | 15.4930 | 20.7547 | 46.1929 | 22 | 120 | 22 | 84 | 84 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 32.5581 | 87.5000 | 20.0000 | 45.0262 | 21 | 3 | 21 | 84 | 84 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.8138 | 96.2869 | 99.3900 | 32.9111 | 6431 | 248 | 13686 | 84 | 81 | 96.4286 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 18.4466 | 95.4243 | 0 | 0 | 19 | 84 | 24 | 28.5714 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 18.4466 | 95.4243 | 0 | 0 | 19 | 84 | 24 | 28.5714 | |
| ciseli-custom | INDEL | D6_15 | map_siren | homalt | 66.5025 | 82.3077 | 55.7895 | 83.1709 | 107 | 23 | 106 | 84 | 76 | 90.4762 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 56.0912 | 49.6774 | 64.4068 | 91.5984 | 154 | 156 | 152 | 84 | 66 | 78.5714 | |
| ckim-gatk | INDEL | * | segdup | het | 96.8043 | 99.1814 | 94.5384 | 96.5594 | 1454 | 12 | 1454 | 84 | 1 | 1.1905 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4502 | 93.0451 | 95.8984 | 70.3618 | 1980 | 148 | 1964 | 84 | 78 | 92.8571 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.6481 | 99.5697 | 99.7266 | 69.7354 | 31009 | 134 | 31007 | 85 | 34 | 40.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.6481 | 99.5697 | 99.7266 | 69.7354 | 31009 | 134 | 31007 | 85 | 34 | 40.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | * | 90.7857 | 97.5806 | 84.8754 | 90.3137 | 484 | 12 | 477 | 85 | 9 | 10.5882 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.1756 | 97.7947 | 96.5643 | 68.6200 | 2439 | 55 | 2389 | 85 | 10 | 11.7647 | |
| gduggal-bwafb | INDEL | I6_15 | HG002complexvar | homalt | 92.1427 | 91.4333 | 92.8631 | 43.3935 | 1110 | 104 | 1106 | 85 | 84 | 98.8235 | |
| gduggal-bwafb | SNP | ti | func_cds | * | 99.6673 | 99.9492 | 99.3869 | 27.6810 | 13780 | 7 | 13780 | 85 | 2 | 2.3529 | |
| gduggal-bwafb | SNP | ti | func_cds | het | 99.4792 | 99.9530 | 99.0099 | 30.9221 | 8500 | 4 | 8500 | 85 | 2 | 2.3529 | |
| ltrigg-rtg2 | INDEL | * | HG002complexvar | hetalt | 95.5730 | 93.2685 | 97.9943 | 75.0000 | 3450 | 249 | 4153 | 85 | 84 | 98.8235 | |
| jli-custom | SNP | * | * | homalt | 99.9850 | 99.9771 | 99.9928 | 17.2570 | 1179891 | 270 | 1179875 | 85 | 66 | 77.6471 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 57.9710 | 62.5000 | 54.0541 | 80.8884 | 100 | 60 | 100 | 85 | 84 | 98.8235 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 90.0260 | 94.5355 | 85.9272 | 79.6359 | 519 | 30 | 519 | 85 | 85 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l100_m1_e0 | homalt | 99.3441 | 99.0075 | 99.6831 | 63.9191 | 26735 | 268 | 26735 | 85 | 65 | 76.4706 | |
| jpowers-varprowl | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.4861 | 99.6732 | 93.4966 | 73.1567 | 1220 | 4 | 1222 | 85 | 31 | 36.4706 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.1831 | 83.0612 | 73.8462 | 79.1933 | 407 | 83 | 240 | 85 | 82 | 96.4706 | |
| hfeng-pmm2 | INDEL | * | map_siren | * | 98.8132 | 98.7719 | 98.8544 | 81.7102 | 7319 | 91 | 7335 | 85 | 17 | 20.0000 | |
| jlack-gatk | INDEL | I1_5 | map_siren | het | 96.7640 | 98.4533 | 95.1317 | 84.9119 | 1655 | 26 | 1661 | 85 | 5 | 5.8824 | |
| jlack-gatk | SNP | tv | HG002compoundhet | * | 99.3236 | 99.5965 | 99.0521 | 49.7619 | 8887 | 36 | 8882 | 85 | 24 | 28.2353 | |