PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73951-74000 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 70.5915 | 71.0059 | 70.1818 | 64.6075 | 120 | 49 | 193 | 82 | 77 | 93.9024 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.2421 | 99.1889 | 97.3132 | 58.3402 | 2935 | 24 | 2970 | 82 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.3212 | 98.9623 | 95.7336 | 62.0458 | 1812 | 19 | 1840 | 82 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | hetalt | 77.7377 | 63.7887 | 99.4948 | 53.3255 | 16062 | 9118 | 16150 | 82 | 81 | 98.7805 | |
| mlin-fermikit | INDEL | * | segdup | * | 95.7518 | 94.7966 | 96.7265 | 92.3178 | 2423 | 133 | 2423 | 82 | 67 | 81.7073 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2661 | 99.8221 | 98.7161 | 56.1302 | 6173 | 11 | 6305 | 82 | 1 | 1.2195 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.8848 | 99.7965 | 97.9897 | 57.5988 | 3923 | 8 | 3997 | 82 | 1 | 1.2195 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 81.2115 | 77.3016 | 85.5379 | 66.6471 | 487 | 143 | 485 | 82 | 76 | 92.6829 | |
| jpowers-varprowl | SNP | ti | map_siren | homalt | 99.6196 | 99.4567 | 99.7830 | 54.0684 | 37710 | 206 | 37711 | 82 | 57 | 69.5122 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5168 | 96.7193 | 98.3276 | 70.0415 | 4835 | 164 | 4821 | 82 | 63 | 76.8293 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5168 | 96.7193 | 98.3276 | 70.0415 | 4835 | 164 | 4821 | 82 | 63 | 76.8293 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.4223 | 99.8206 | 99.0272 | 61.0885 | 8345 | 15 | 8347 | 82 | 80 | 97.5610 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.4223 | 99.8206 | 99.0272 | 61.0885 | 8345 | 15 | 8347 | 82 | 80 | 97.5610 | |
| cchapple-custom | INDEL | * | map_l100_m0_e0 | het | 94.3799 | 96.1802 | 92.6457 | 86.7828 | 982 | 39 | 1033 | 82 | 17 | 20.7317 | |
| cchapple-custom | INDEL | * | map_l150_m2_e1 | * | 95.3280 | 96.1779 | 94.4929 | 89.8327 | 1384 | 55 | 1407 | 82 | 17 | 20.7317 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.8519 | 95.9843 | 97.7354 | 64.7626 | 3418 | 143 | 3539 | 82 | 70 | 85.3659 | |
| ckim-dragen | SNP | tv | map_l250_m1_e0 | * | 97.1159 | 97.3177 | 96.9150 | 89.2026 | 2576 | 71 | 2576 | 82 | 11 | 13.4146 | |
| ciseli-custom | INDEL | * | map_l250_m1_e0 | * | 57.5139 | 51.1475 | 65.6904 | 97.4137 | 156 | 149 | 157 | 82 | 40 | 48.7805 | |
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | homalt | 39.0246 | 30.7443 | 53.4091 | 73.8095 | 95 | 214 | 94 | 82 | 74 | 90.2439 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 27.4282 | 17.8862 | 58.7940 | 51.5815 | 44 | 202 | 117 | 82 | 82 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 85.8715 | 81.4199 | 90.8380 | 65.8788 | 539 | 123 | 813 | 82 | 43 | 52.4390 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 40.3639 | 25.5814 | 95.6173 | 48.0711 | 902 | 2624 | 1789 | 82 | 81 | 98.7805 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 40.3639 | 25.5814 | 95.6173 | 48.0711 | 902 | 2624 | 1789 | 82 | 81 | 98.7805 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | * | 98.0431 | 97.7147 | 98.3737 | 89.9899 | 4960 | 116 | 4960 | 82 | 25 | 30.4878 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 74.4745 | 97.6378 | 60.1942 | 45.5026 | 124 | 3 | 124 | 82 | 82 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | HG002complexvar | homalt | 97.7875 | 95.7534 | 99.9100 | 24.5806 | 91072 | 4039 | 90999 | 82 | 77 | 93.9024 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | * | 66.9120 | 61.7424 | 73.0263 | 82.9213 | 163 | 101 | 222 | 82 | 58 | 70.7317 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | het | 87.9923 | 98.4375 | 79.5511 | 91.6753 | 189 | 3 | 319 | 82 | 26 | 31.7073 | |
| gduggal-snapfb | SNP | * | map_l100_m1_e0 | homalt | 98.4097 | 97.1633 | 99.6885 | 68.9633 | 26237 | 766 | 26239 | 82 | 29 | 35.3659 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9642 | 97.6007 | 96.3360 | 64.2948 | 2156 | 53 | 2156 | 82 | 77 | 93.9024 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 70.5199 | 59.6244 | 86.2876 | 93.0181 | 508 | 344 | 516 | 82 | 38 | 46.3415 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 41.0072 | 95.7686 | 0 | 0 | 57 | 82 | 9 | 10.9756 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 8.2305 | 5.2083 | 19.6078 | 88.3429 | 20 | 364 | 20 | 82 | 46 | 56.0976 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 12.5828 | 9.4527 | 18.8119 | 88.2558 | 19 | 182 | 19 | 82 | 46 | 56.0976 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | het | 99.4518 | 99.3346 | 99.5693 | 72.3168 | 18960 | 127 | 18956 | 82 | 8 | 9.7561 | |
| hfeng-pmm2 | SNP | ti | segdup | het | 99.5229 | 99.7257 | 99.3210 | 90.4269 | 11997 | 33 | 11995 | 82 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | * | het | 97.3472 | 97.4992 | 97.1956 | 74.5540 | 3080 | 79 | 2842 | 82 | 62 | 75.6098 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7099 | 99.7098 | 99.7099 | 59.0011 | 28178 | 82 | 28181 | 82 | 31 | 37.8049 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e1 | het | 99.4037 | 99.0762 | 99.7333 | 64.8020 | 30674 | 286 | 30667 | 82 | 20 | 24.3902 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e0 | * | 99.3647 | 99.1322 | 99.5983 | 75.0541 | 20334 | 178 | 20330 | 82 | 23 | 28.0488 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9618 | 96.7154 | 99.2407 | 47.8941 | 10718 | 364 | 10718 | 82 | 78 | 95.1220 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.0384 | 95.2632 | 92.8447 | 81.0891 | 1267 | 63 | 1064 | 82 | 76 | 92.6829 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | * | 92.4081 | 89.1741 | 95.8856 | 50.9476 | 1911 | 232 | 1911 | 82 | 81 | 98.7805 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 59.9292 | 69.6296 | 52.6012 | 68.2569 | 94 | 41 | 91 | 82 | 79 | 96.3415 | |
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | het | 47.2130 | 37.7301 | 63.0631 | 92.0173 | 123 | 203 | 140 | 82 | 10 | 12.1951 | |
| anovak-vg | INDEL | I1_5 | map_l150_m0_e0 | * | 58.6797 | 59.6591 | 57.7320 | 93.8118 | 105 | 71 | 112 | 82 | 51 | 62.1951 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.7969 | 96.8324 | 96.7615 | 60.7624 | 2415 | 79 | 2450 | 82 | 32 | 39.0244 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.0808 | 99.3135 | 84.1085 | 47.7204 | 434 | 3 | 434 | 82 | 82 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 79.1045 | 98.7578 | 65.9751 | 35.3887 | 159 | 2 | 159 | 82 | 82 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | * | 98.5526 | 98.8862 | 98.2213 | 89.0457 | 4528 | 51 | 4528 | 82 | 19 | 23.1707 | |