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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1474 1475 1476 1477 1478 1479 1480 1481 1482 ... 1720 1721 » 73851-73900 / 86044 show all
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.5554	99.5199	99.5910	69.5435	19485	94	19481	80	32	40.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.5554	99.5199	99.5910	69.5435	19485	94	19481	80	32	40.0000
rpoplin-dv42	SNP	ti	map_l150_m0_e0	*	98.6405	98.3081	98.9751	78.2174	7728	133	7726	80	57	71.2500
gduggal-bwafb	SNP	ti	map_l250_m2_e1	het	97.5129	97.4538	97.5721	90.4931	3215	84	3215	80	23	28.7500
gduggal-bwaplat	INDEL	*	HG002compoundhet	hetalt	83.3202	71.6362	99.5583	64.0234	18038	7142	18031	80	66	82.5000
gduggal-bwaplat	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	67.9939	52.5579	96.2669	70.6277	2065	1864	2063	80	56	70.0000
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	50.8522	34.3937	97.5171	49.4033	2811	5362	3142	80	77	96.2500
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	91.3047	95.1389	87.7676	60.8149	548	28	574	80	75	93.7500
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	77.2155	68.0091	89.3048	56.7130	2398	1128	668	80	79	98.7500
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	77.2155	68.0091	89.3048	56.7130	2398	1128	668	80	79	98.7500
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.1165	95.7477	98.5251	68.8562	5359	238	5344	80	71	88.7500
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	96.1564	95.4426	96.8811	68.1564	2534	121	2485	80	69	86.2500
jlack-gatk	INDEL	*	map_l150_m0_e0	het	88.0882	97.0674	80.6295	94.9157	331	10	333	80	1	1.2500
hfeng-pmm1	SNP	ti	map_l100_m0_e0	*	99.4038	99.1778	99.6308	67.2084	21592	179	21589	80	22	27.5000
hfeng-pmm1	SNP	ti	map_l100_m1_e0	het	99.3951	99.0615	99.7309	63.4093	29661	281	29654	80	20	25.0000
hfeng-pmm1	SNP	ti	map_l150_m1_e0	*	99.3490	99.1071	99.5921	73.5929	19536	176	19532	80	23	28.7500
ckim-isaac	SNP	*	map_l100_m2_e1	het	81.8788	69.4358	99.7550	67.9468	32564	14334	32571	80	12	15.0000
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	91.8799	87.4858	96.7387	79.1713	2314	331	2373	80	9	11.2500
eyeh-varpipe	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	0.0000	0.0000	65.6652	95.8907	0	0	153	80	52	65.0000
dgrover-gatk	INDEL	I6_15	*	het	99.0704	98.9435	99.1977	59.7099	9927	106	9891	80	53	66.2500
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	55.0938	52.7363	57.6720	74.5283	106	95	109	80	46	57.5000
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	13.0521	7.5688	47.3684	59.8945	33	403	72	80	25	31.2500
asubramanian-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.0207	95.3171	98.7864	34.4210	6493	319	6512	80	77	96.2500
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.9986	97.0872	98.9273	73.5231	6233	187	7378	80	61	76.2500
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.9986	97.0872	98.9273	73.5231	6233	187	7378	80	61	76.2500
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	98.8363	98.8582	98.8143	45.0033	6667	77	6667	80	1	1.2500
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	92.0189	97.0540	87.4804	71.5621	593	18	559	80	76	95.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6669	97.8687	99.4782	72.3688	15245	332	15252	80	64	80.0000
bgallagher-sentieon	SNP	ti	map_l250_m2_e1	het	98.2995	98.9997	97.6091	90.8150	3266	33	3266	80	16	20.0000
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	94.9783	96.9173	93.1153	84.1668	1289	41	1082	80	71	88.7500
anovak-vg	SNP	ti	func_cds	het	98.3229	97.6129	99.0434	32.3272	8301	203	8283	80	49	61.2500
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.1305	99.0001	99.2612	79.9407	10693	108	10748	80	26	32.5000
ciseli-custom	INDEL	*	map_l150_m2_e0	homalt	63.4799	54.2620	76.4706	91.7215	261	220	260	80	59	73.7500
ciseli-custom	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	0.0000	0.0000	15.7895	95.5649	0	0	15	80	22	27.5000
ciseli-custom	INDEL	D1_5	map_l100_m0_e0	het	76.7811	70.7276	83.9679	91.1431	418	173	419	80	17	21.2500
ciseli-custom	INDEL	D1_5	map_l150_m2_e0	het	72.4320	65.5642	80.9069	93.9773	337	177	339	80	21	26.2500
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.2085	99.0041	99.4137	68.4982	13620	137	13565	80	52	65.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.2085	99.0041	99.4137	68.4982	13620	137	13565	80	52	65.0000
ckim-dragen	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6173	97.7724	99.4771	72.6068	15230	347	15218	80	60	75.0000
ckim-dragen	INDEL	I1_5	HG002complexvar	*	99.5809	99.4065	99.7559	56.6825	33165	198	33105	81	67	82.7160
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2927	99.2413	99.3442	65.4836	12426	95	12270	81	75	92.5926
ckim-dragen	INDEL	*	map_l125_m2_e0	*	96.6158	96.9035	96.3299	89.2603	2128	68	2126	81	13	16.0494
ciseli-custom	INDEL	D1_5	map_l150_m2_e1	het	72.4170	65.5172	80.9412	93.9878	342	180	344	81	22	27.1605
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	62.9804	73.2283	55.2486	68.8468	93	34	100	81	11	13.5802
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	12.2983	7.6493	31.3559	74.7323	41	495	37	81	73	90.1235
ciseli-custom	INDEL	*	map_l150_m2_e1	homalt	63.5484	54.2683	76.6571	91.7065	267	225	266	81	59	72.8395
cchapple-custom	INDEL	*	map_l150_m2_e0	*	95.3298	96.2358	94.4406	89.8140	1355	53	1376	81	16	19.7531
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	93.8760	89.1186	99.1699	39.2139	3448	421	9677	81	70	86.4198
gduggal-bwafb	SNP	ti	map_l250_m2_e0	*	98.0365	97.7037	98.3715	89.9163	4893	115	4893	81	24	29.6296
gduggal-bwaplat	SNP	ti	map_l100_m0_e0	*	72.8908	57.5582	99.3581	86.0136	12531	9240	12537	81	26	32.0988

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