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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
73051-73100 / 86044 show all
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
59.8657
45.0761
89.0995
75.7842
5636865646966
95.6522
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
59.8657
45.0761
89.0995
75.7842
5636865646966
95.6522
gduggal-snapfbINDELI6_15HG002complexvarhetalt
60.2641
50.3679
75.0000
58.1818
6166072076966
95.6522
gduggal-snapvardINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
25.0000
67.1429
0206236923
33.3333
gduggal-snapvardINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
24.1758
67.1480
095226923
33.3333
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
0.0000
0.0000
28.1250
61.4458
0497276924
34.7826
anovak-vgINDELI6_15map_sirenhomalt
64.5973
83.3333
52.7397
70.1431
7515776960
86.9565
bgallagher-sentieonSNPtvHG002complexvarhet
99.9389
99.9237
99.9542
21.4883
1506161151505406921
30.4348
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.2570
93.3938
99.3014
31.9625
978369298086968
98.5507
rpoplin-dv42INDELI6_15*homalt
97.7056
96.5700
98.8683
48.6914
602521460286968
98.5507
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
92.1109
98.8558
86.2275
47.5941
43254326969
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.3178
93.0147
93.6229
58.8750
10127610136950
72.4638
ckim-vqsrINDELI1_5HG002compoundhethet
94.8823
98.1176
91.8536
86.7262
834167786967
97.1014
egarrison-hhgaSNP*map_l125_m1_e0het
99.2263
98.7039
99.7544
69.9636
28024368280246928
40.5797
egarrison-hhgaSNP*map_l150_m2_e1*
99.3609
98.9413
99.7840
74.9205
31869341318696932
46.3768
dgrover-gatkINDELI16_PLUS*homalt
97.7415
99.8078
95.7591
72.2497
1558315586966
95.6522
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_diTR_11to50het
83.1362
81.1475
85.2248
77.0629
396923986922
31.8841
ckim-isaacSNP**homalt
98.3805
96.8182
99.9940
14.4545
11426123755011426686950
72.4638
ckim-isaacSNP*map_l125_m2_e1*
73.7959
58.5590
99.7510
72.8548
2764119561276436917
24.6377
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
96.4572
94.0150
99.0295
31.3640
700644670416948
69.5652
ckim-vqsrINDELD16_PLUSHG002compoundhethet
88.8043
99.2593
80.3419
59.7015
40232826967
97.1014
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
72.8440
62.9842
86.3636
38.2927
4392584376965
94.2029
dgrover-gatkINDEL**hetalt
96.9073
94.2584
99.7094
58.4640
237881449240187068
97.1429
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.8283
92.7831
96.9658
59.2331
223717422377066
94.2857
egarrison-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2155
98.8292
99.6047
53.9964
17642209176407027
38.5714
ltrigg-rtg2INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.8029
98.7545
98.8513
71.4513
60267660247013
18.5714
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
93.3753
98.5816
88.6914
66.8807
55685497069
98.5714
ltrigg-rtg2SNPtimap_l100_m2_e0het
98.9081
98.0635
99.7675
53.0390
3002959330032706
8.5714
ndellapenna-hhgaINDELI16_PLUSHG002compoundhethet
51.2283
72.3404
39.6552
84.3243
3413467055
78.5714
ndellapenna-hhgaINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
88.3102
87.5375
89.0966
84.7216
583835727042
60.0000
ndellapenna-hhgaINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
88.3102
87.5375
89.0966
84.7216
583835727042
60.0000
qzeng-customSNP*map_l150_m2_e0homalt
80.6830
68.0315
99.1149
73.2795
7959374078397070
100.0000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
93.1982
95.0000
91.4634
89.5261
684367507022
31.4286
qzeng-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
96.9066
98.3509
95.5042
77.2302
14912514877013
18.5714
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.8561
97.7330
92.1437
91.1616
776188217014
20.0000
ltrigg-rtg1INDELD6_15HG002compoundhet*
96.2411
93.4780
99.1726
30.6557
844258983907063
90.0000
ltrigg-rtg1INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6359
97.7403
99.5481
71.8594
15225352154207031
44.2857
jmaeng-gatkINDELD1_5map_l125_m2_e0*
96.1968
98.3377
94.1472
90.8640
1124191126706
8.5714
jmaeng-gatkINDELD1_5map_l125_m2_e1*
96.2418
98.3578
94.2149
90.9091
1138191140706
8.5714
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
92.1277
99.0847
86.0835
48.4103
43344337070
100.0000
jmaeng-gatkSNPti*homalt
99.6264
99.2642
99.9912
16.0789
79712959097971207046
65.7143
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
59.7633
44.9960
88.9590
75.7274
5626875647067
95.7143
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
59.7633
44.9960
88.9590
75.7274
5626875647067
95.7143
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.3085
95.2111
99.5005
59.4918
13917700139437038
54.2857
jli-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
96.1711
94.2520
98.1699
58.1784
375522937557062
88.5714
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2231
99.8046
98.6484
46.1418
51071051097068
97.1429
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2319
99.4770
98.9880
80.7127
68473668477012
17.1429
ltrigg-rtg1INDELI6_15HG002compoundhet*
94.7100
90.6791
99.1159
32.9210
795881878487064
91.4286
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
98.5396
99.3917
97.7019
59.4515
2941182976700
0.0000
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
97.7961
99.2900
96.3466
63.0116
1818131846700
0.0000