PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72551-72600 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | ti | map_l100_m2_e1 | het | 99.1089 | 98.4335 | 99.7937 | 64.2644 | 30475 | 485 | 30477 | 63 | 24 | 38.0952 | |
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 3.0769 | 55.1724 | 0 | 0 | 2 | 63 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | segdup | homalt | 99.2653 | 99.1250 | 99.4061 | 87.8458 | 10649 | 94 | 10544 | 63 | 57 | 90.4762 | |
| qzeng-custom | SNP | tv | map_l100_m2_e1 | homalt | 87.7555 | 78.7143 | 99.1432 | 62.9833 | 7322 | 1980 | 7290 | 63 | 62 | 98.4127 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | * | 99.1825 | 98.6258 | 99.7454 | 56.6822 | 24689 | 344 | 24684 | 63 | 5 | 7.9365 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | het | 98.8079 | 98.0299 | 99.5983 | 53.4836 | 15624 | 314 | 15620 | 63 | 2 | 3.1746 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.8778 | 96.0437 | 91.8075 | 72.7305 | 704 | 29 | 706 | 63 | 44 | 69.8413 | |
| gduggal-snapplat | SNP | ti | map_l250_m0_e0 | het | 84.2801 | 77.7302 | 92.0354 | 96.9671 | 726 | 208 | 728 | 63 | 27 | 42.8571 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | het | 95.6711 | 96.4433 | 94.9111 | 81.1539 | 1166 | 43 | 1175 | 63 | 7 | 11.1111 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 67.5325 | 67.7083 | 67.3575 | 24.9027 | 130 | 62 | 130 | 63 | 63 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 40.0000 | 40.0000 | 55.8824 | 30 | 45 | 42 | 63 | 42 | 66.6667 | |
| gduggal-snapplat | INDEL | * | func_cds | * | 70.8193 | 61.5730 | 83.3333 | 53.5627 | 274 | 171 | 315 | 63 | 1 | 1.5873 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.1858 | 63.3364 | 95.5758 | 45.0405 | 1363 | 789 | 1361 | 63 | 51 | 80.9524 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 39.7661 | 32.2275 | 51.9084 | 77.2174 | 68 | 143 | 68 | 63 | 54 | 85.7143 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.8634 | 100.0000 | 97.7524 | 37.9730 | 2738 | 0 | 2740 | 63 | 41 | 65.0794 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e1 | homalt | 99.1004 | 98.8820 | 99.3197 | 66.7481 | 9198 | 104 | 9198 | 63 | 40 | 63.4921 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.7723 | 96.7851 | 94.7804 | 58.3362 | 1144 | 38 | 1144 | 63 | 61 | 96.8254 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5421 | 99.6910 | 99.3935 | 43.8031 | 10325 | 32 | 10325 | 63 | 62 | 98.4127 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1198 | 98.2713 | 92.1642 | 62.1469 | 739 | 13 | 741 | 63 | 62 | 98.4127 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002compoundhet | homalt | 8.6957 | 100.0000 | 4.5455 | 78.0731 | 3 | 0 | 3 | 63 | 59 | 93.6508 | |
| asubramanian-gatk | SNP | ti | HG002complexvar | het | 98.4409 | 96.9492 | 99.9794 | 17.3446 | 305163 | 9603 | 305113 | 63 | 21 | 33.3333 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.1411 | 91.0204 | 91.2621 | 58.1544 | 669 | 66 | 658 | 63 | 61 | 96.8254 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 61.6716 | 83.8235 | 48.7805 | 53.5849 | 57 | 11 | 60 | 63 | 57 | 90.4762 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.2004 | 96.2658 | 96.1350 | 51.4737 | 1521 | 59 | 1567 | 63 | 25 | 39.6825 | |
| anovak-vg | SNP | tv | map_l100_m2_e1 | homalt | 91.3691 | 84.6807 | 99.2047 | 63.3275 | 7877 | 1425 | 7859 | 63 | 46 | 73.0159 | |
| astatham-gatk | SNP | ti | map_l100_m1_e0 | * | 92.0088 | 85.3122 | 99.8461 | 68.2409 | 40891 | 7040 | 40884 | 63 | 36 | 57.1429 | |
| astatham-gatk | SNP | ti | map_l100_m2_e0 | * | 92.0782 | 85.4292 | 99.8496 | 69.7884 | 41827 | 7134 | 41820 | 63 | 36 | 57.1429 | |
| rpoplin-dv42 | INDEL | D1_5 | * | homalt | 99.7606 | 99.6505 | 99.8710 | 59.0122 | 48755 | 171 | 48760 | 63 | 56 | 88.8889 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6672 | 99.9578 | 97.4095 | 54.3286 | 2369 | 1 | 2369 | 63 | 62 | 98.4127 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.1053 | 96.8944 | 71.2329 | 36.7052 | 156 | 5 | 156 | 63 | 63 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3467 | 99.2253 | 99.4684 | 49.9176 | 11783 | 92 | 11787 | 63 | 54 | 85.7143 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.2661 | 86.8078 | 96.2071 | 67.4824 | 1599 | 243 | 1598 | 63 | 54 | 85.7143 | |
| eyeh-varpipe | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 92.9054 | 91.8495 | 0 | 0 | 825 | 63 | 38 | 60.3175 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e0 | * | 98.3370 | 98.3753 | 98.2987 | 86.6371 | 3633 | 60 | 3640 | 63 | 16 | 25.3968 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e1 | * | 98.3513 | 98.3759 | 98.3267 | 86.6891 | 3695 | 61 | 3702 | 63 | 16 | 25.3968 | |
| dgrover-gatk | SNP | ti | map_l250_m1_e0 | * | 98.5022 | 98.3839 | 98.6208 | 89.9439 | 4505 | 74 | 4505 | 63 | 18 | 28.5714 | |
| dgrover-gatk | SNP | ti | map_l250_m2_e0 | * | 98.6206 | 98.5024 | 98.7390 | 90.3671 | 4933 | 75 | 4933 | 63 | 18 | 28.5714 | |
| dgrover-gatk | SNP | tv | map_l150_m0_e0 | het | 98.2667 | 98.7337 | 97.8041 | 84.8097 | 2807 | 36 | 2806 | 63 | 8 | 12.6984 | |
| ckim-vqsr | INDEL | * | HG002complexvar | hetalt | 91.5318 | 85.7259 | 98.1813 | 66.4504 | 3171 | 528 | 3401 | 63 | 63 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 77.4165 | 63.6080 | 98.8826 | 71.6925 | 5913 | 3383 | 5575 | 63 | 56 | 88.8889 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.6237 | 97.0597 | 98.1943 | 69.6107 | 3433 | 104 | 3426 | 63 | 42 | 66.6667 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.8371 | 94.5372 | 95.1389 | 64.3074 | 1246 | 72 | 1233 | 63 | 60 | 95.2381 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.3615 | 99.8976 | 96.8719 | 41.6063 | 1951 | 2 | 1951 | 63 | 62 | 98.4127 | |
| ckim-vqsr | SNP | * | map_l250_m2_e0 | * | 59.1976 | 42.3843 | 98.1210 | 97.1166 | 3342 | 4543 | 3342 | 64 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e0 | het | 69.2853 | 53.6581 | 97.7552 | 97.1324 | 2787 | 2407 | 2787 | 64 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | HG002complexvar | hetalt | 96.4173 | 94.5931 | 98.3131 | 68.7891 | 3499 | 200 | 3730 | 64 | 63 | 98.4375 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.8806 | 94.6889 | 95.0731 | 64.4402 | 1248 | 70 | 1235 | 64 | 61 | 95.3125 | |
| egarrison-hhga | SNP | ti | HG002compoundhet | homalt | 99.3116 | 99.4861 | 99.1378 | 31.0451 | 7356 | 38 | 7359 | 64 | 54 | 84.3750 | |
| egarrison-hhga | SNP | ti | segdup | het | 99.5306 | 99.5927 | 99.4687 | 89.2156 | 11981 | 49 | 11981 | 64 | 2 | 3.1250 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 80.0000 | 94.8570 | 0 | 0 | 256 | 64 | 53 | 82.8125 | |