PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72051-72100 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 56.0000 | 84.0000 | 42.0000 | 67.7419 | 42 | 8 | 42 | 58 | 51 | 87.9310 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | het | 98.8114 | 98.0098 | 99.6262 | 53.3646 | 15463 | 314 | 15459 | 58 | 2 | 3.4483 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002complexvar | het | 90.4295 | 87.7145 | 93.3180 | 67.0463 | 971 | 136 | 810 | 58 | 45 | 77.5862 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5354 | 97.7762 | 99.3066 | 59.4807 | 8222 | 187 | 8306 | 58 | 19 | 32.7586 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 87.6250 | 95.3668 | 81.0458 | 57.1429 | 247 | 12 | 248 | 58 | 41 | 70.6897 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.7273 | 89.9614 | 80.0687 | 60.1915 | 233 | 26 | 233 | 58 | 47 | 81.0345 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 35.7190 | 84.2105 | 22.6667 | 92.9112 | 16 | 3 | 17 | 58 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.0650 | 84.5638 | 85.5721 | 60.8569 | 126 | 23 | 344 | 58 | 50 | 86.2069 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | homalt | 74.8140 | 66.2900 | 85.8537 | 77.2601 | 352 | 179 | 352 | 58 | 56 | 96.5517 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.1651 | 96.1994 | 98.1505 | 57.1994 | 3088 | 122 | 3078 | 58 | 57 | 98.2759 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 94.5649 | 98.4772 | 90.9516 | 90.5332 | 582 | 9 | 583 | 58 | 3 | 5.1724 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 95.1391 | 98.0474 | 92.3984 | 92.1292 | 703 | 14 | 705 | 58 | 5 | 8.6207 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 94.0939 | 98.8327 | 89.7887 | 93.3263 | 508 | 6 | 510 | 58 | 4 | 6.8966 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 94.0832 | 98.6590 | 89.9130 | 93.3633 | 515 | 7 | 517 | 58 | 4 | 6.8966 | |
| jmaeng-gatk | INDEL | I1_5 | map_siren | * | 98.3096 | 98.5358 | 98.0845 | 83.5542 | 2961 | 44 | 2970 | 58 | 9 | 15.5172 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5812 | 99.7018 | 99.4609 | 42.3318 | 10700 | 32 | 10700 | 58 | 2 | 3.4483 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.9866 | 84.1808 | 72.6415 | 67.5841 | 149 | 28 | 154 | 58 | 58 | 100.0000 | |
| jpowers-varprowl | SNP | ti | func_cds | het | 99.3416 | 99.3650 | 99.3183 | 29.2650 | 8450 | 54 | 8450 | 58 | 2 | 3.4483 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e1 | homalt | 99.1488 | 98.9250 | 99.3737 | 68.5771 | 9202 | 100 | 9202 | 58 | 41 | 70.6897 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | het | 99.1571 | 98.8268 | 99.4897 | 52.9280 | 11456 | 136 | 11308 | 58 | 18 | 31.0345 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | het | 98.9599 | 98.3013 | 99.6273 | 57.1739 | 15509 | 268 | 15505 | 58 | 5 | 8.6207 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.9622 | 94.5860 | 95.3414 | 70.8976 | 1188 | 68 | 1187 | 58 | 6 | 10.3448 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7701 | 99.9578 | 97.6102 | 56.2071 | 2369 | 1 | 2369 | 58 | 57 | 98.2759 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.2264 | 95.2551 | 99.2811 | 61.5901 | 8010 | 399 | 8010 | 58 | 49 | 84.4828 | |
| ckim-gatk | SNP | tv | map_l250_m2_e0 | * | 69.3914 | 54.1985 | 96.4198 | 96.4303 | 1562 | 1320 | 1562 | 58 | 1 | 1.7241 | |
| ckim-gatk | SNP | tv | map_l250_m2_e0 | het | 72.7389 | 58.8660 | 95.1667 | 96.8726 | 1142 | 798 | 1142 | 58 | 1 | 1.7241 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 49.5193 | 78.0488 | 36.2637 | 92.4606 | 32 | 9 | 33 | 58 | 18 | 31.0345 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2357 | 94.9731 | 99.6087 | 58.9389 | 14642 | 775 | 14763 | 58 | 58 | 100.0000 | |
| ckim-dragen | SNP | ti | * | homalt | 99.9710 | 99.9493 | 99.9928 | 15.7227 | 802631 | 407 | 802738 | 58 | 51 | 87.9310 | |
| cchapple-custom | SNP | * | * | homalt | 99.9445 | 99.8940 | 99.9951 | 16.2464 | 1178910 | 1251 | 1177636 | 58 | 51 | 87.9310 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 72.7749 | 91.8182 | 60.2740 | 84.1649 | 101 | 9 | 88 | 58 | 16 | 27.5862 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 68.4211 | 64.4628 | 72.8972 | 66.9243 | 156 | 86 | 156 | 58 | 55 | 94.8276 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 78.6395 | 95.0820 | 67.0455 | 69.1769 | 116 | 6 | 118 | 58 | 55 | 94.8276 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 69.2265 | 56.5217 | 89.2989 | 95.0257 | 481 | 370 | 484 | 58 | 10 | 17.2414 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.5844 | 85.2017 | 99.0009 | 65.9710 | 5746 | 998 | 5747 | 58 | 17 | 29.3103 | |
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | het | 96.5517 | 96.3626 | 96.7416 | 89.4306 | 1722 | 65 | 1722 | 58 | 11 | 18.9655 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | * | 97.0472 | 96.6450 | 97.4528 | 83.5060 | 1786 | 62 | 2219 | 58 | 35 | 60.3448 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 29.7872 | 24.6479 | 37.6344 | 33.0935 | 35 | 107 | 35 | 58 | 57 | 98.2759 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7580 | 99.7808 | 99.7353 | 72.9432 | 21851 | 48 | 21851 | 58 | 58 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.6745 | 96.2080 | 99.1864 | 53.3595 | 7104 | 280 | 7071 | 58 | 53 | 91.3793 | |
| hfeng-pmm2 | INDEL | D6_15 | * | homalt | 99.3853 | 99.6838 | 99.0886 | 51.6854 | 6306 | 20 | 6306 | 58 | 54 | 93.1034 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0230 | 99.5751 | 98.4769 | 55.3942 | 3750 | 16 | 3750 | 58 | 54 | 93.1034 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0230 | 99.5751 | 98.4769 | 55.3942 | 3750 | 16 | 3750 | 58 | 54 | 93.1034 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.1075 | 96.6926 | 99.5645 | 63.4833 | 13302 | 455 | 13260 | 58 | 44 | 75.8621 | |
| hfeng-pmm3 | SNP | tv | map_l100_m0_e0 | * | 99.4268 | 99.3775 | 99.4762 | 69.0933 | 11015 | 69 | 11014 | 58 | 8 | 13.7931 | |
| hfeng-pmm2 | SNP | * | map_l250_m0_e0 | * | 97.8575 | 98.4075 | 97.3136 | 93.5175 | 2101 | 34 | 2101 | 58 | 9 | 15.5172 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.2678 | 97.2079 | 99.3509 | 74.1300 | 8878 | 255 | 8878 | 58 | 4 | 6.8966 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.2678 | 97.2079 | 99.3509 | 74.1300 | 8878 | 255 | 8878 | 58 | 4 | 6.8966 | |
| hfeng-pmm3 | INDEL | D1_5 | * | homalt | 99.8825 | 99.8835 | 99.8815 | 58.1721 | 48869 | 57 | 48874 | 58 | 56 | 96.5517 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.1075 | 96.6926 | 99.5645 | 63.4833 | 13302 | 455 | 13260 | 58 | 44 | 75.8621 | |