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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1434 1435 1436 1437 1438 1439 1440 1441 1442 ... 1720 1721 » 71851-71900 / 86044 show all
astatham-gatk	SNP	*	map_l250_m2_e0	*	92.6519	86.9119	99.2038	90.7351	6853	1032	6853	55	19	34.5455
astatham-gatk	SNP	*	map_l250_m2_e1	*	92.6875	86.9663	99.2144	90.7902	6946	1041	6946	55	19	34.5455
astatham-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.7545	95.9460	99.6325	60.1730	14792	625	14910	55	54	98.1818
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	97.2111	96.5725	97.8583	68.9818	2564	91	2513	55	49	89.0909
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	88.4938	92.1283	85.1351	58.7514	316	27	315	55	42	76.3636
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	5.7971	3.3816	20.2899	80.2292	14	400	14	55	47	85.4545
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	22.4719	41.6667	15.3846	67.8218	10	14	10	55	52	94.5455
ckim-gatk	INDEL	I1_5	HG002complexvar	*	99.4404	99.0498	99.8341	56.8511	33046	317	33092	55	41	74.5455
ckim-dragen	INDEL	I6_15	HG002complexvar	*	98.1726	97.5167	98.8375	57.3399	4673	119	4676	55	54	98.1818
cchapple-custom	INDEL	*	map_l125_m0_e0	*	94.9271	95.9184	93.9560	89.0203	846	36	855	55	11	20.0000
ckim-vqsr	SNP	ti	HG002complexvar	het	99.1493	98.3302	99.9822	17.7224	309510	5256	309462	55	18	32.7273
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	82.4178	78.4483	86.8106	63.9896	364	100	362	55	35	63.6364
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	79.2866	71.4286	89.0873	67.9389	440	176	449	55	49	89.0909
egarrison-hhga	INDEL	D1_5	HG002compoundhet	hetalt	77.6385	63.8117	99.1149	65.8609	6519	3697	6159	55	48	87.2727
ckim-vqsr	SNP	tv	map_l125_m0_e0	*	63.5371	46.9462	98.2639	92.6176	3113	3518	3113	55	0	0.0000
ckim-vqsr	SNP	tv	map_l125_m0_e0	het	74.6025	60.2363	97.9675	92.7270	2651	1750	2651	55	0	0.0000
dgrover-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.9381	98.9362	93.1164	62.2579	744	8	744	55	55	100.0000
egarrison-hhga	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	95.1176	93.9650	96.2988	73.4406	1448	93	1431	55	36	65.4545
eyeh-varpipe	INDEL	*	map_l125_m2_e1	het	96.7368	96.5199	96.9546	85.7560	1359	49	1751	55	32	58.1818
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	96.4903	94.0829	99.0241	51.3046	5581	351	5581	55	50	90.9091
hfeng-pmm1	SNP	*	map_l250_m1_e0	het	98.4804	98.1283	98.8350	88.4918	4666	89	4666	55	10	18.1818
hfeng-pmm2	INDEL	*	map_l100_m2_e0	het	98.0384	98.4395	97.6405	86.1291	2271	36	2276	55	7	12.7273
hfeng-pmm2	INDEL	*	map_l100_m2_e1	het	98.0684	98.4635	97.6764	86.2047	2307	36	2312	55	7	12.7273
hfeng-pmm2	INDEL	D16_PLUS	HG002compoundhet	het	86.2040	90.6173	82.2006	57.4966	367	38	254	55	53	96.3636
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	93.1110	94.2922	91.9591	79.3103	826	50	629	55	54	98.1818
hfeng-pmm1	INDEL	I1_5	HG002compoundhet	het	90.1398	87.7647	92.6471	86.3079	746	104	693	55	49	89.0909
hfeng-pmm1	INDEL	D1_5	HG002compoundhet	homalt	90.5363	98.6254	83.6735	73.7366	287	4	287	56	56	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4624	99.5933	99.3319	58.5091	8326	34	8326	56	56	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4624	99.5933	99.3319	58.5091	8326	34	8326	56	56	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.3251	99.4893	99.1616	77.5985	6623	34	6623	56	11	19.6429
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.4586	99.0170	97.9065	84.2545	2619	26	2619	56	14	25.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0795	96.5665	99.6406	67.0543	15525	552	15525	56	32	57.1429
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.0795	96.5665	99.6406	67.0543	15525	552	15525	56	32	57.1429
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.2768	89.5307	99.5544	31.1699	12323	1441	12511	56	50	89.2857
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.2610	89.4954	99.5627	34.0219	12558	1474	12751	56	50	89.2857
jlack-gatk	INDEL	*	map_l250_m1_e0	*	89.9390	96.7213	84.0456	96.8466	295	10	295	56	4	7.1429
jlack-gatk	INDEL	*	map_l250_m2_e0	*	90.6780	96.9789	85.1459	97.0399	321	10	321	56	4	7.1429
jlack-gatk	INDEL	*	map_l250_m2_e1	*	90.7303	96.9970	85.2243	97.1042	323	10	323	56	4	7.1429
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.0240	99.1401	98.9082	42.6607	5073	44	5073	56	56	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.1031	99.1903	99.0160	51.1670	5635	46	5635	56	56	100.0000
hfeng-pmm1	SNP	ti	segdup	het	99.6179	99.7007	99.5352	89.0346	11994	36	11992	56	0	0.0000
hfeng-pmm1	SNP	tv	map_l125_m1_e0	*	99.4714	99.2945	99.6491	69.3117	15903	113	15901	56	16	28.5714
hfeng-pmm1	SNP	tv	map_l125_m2_e0	*	99.4866	99.3147	99.6592	71.0071	16376	113	16374	56	16	28.5714
hfeng-pmm1	SNP	tv	map_l125_m2_e1	*	99.4888	99.3156	99.6626	71.0607	16543	114	16541	56	16	28.5714
hfeng-pmm2	SNP	ti	HG002complexvar	het	99.8373	99.6928	99.9822	16.6591	313799	967	313749	56	7	12.5000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	93.0360	94.2922	91.8129	79.4100	826	50	628	56	55	98.2143
ltrigg-rtg2	INDEL	D1_5	HG002compoundhet	het	97.0089	97.1644	96.8539	67.7653	1679	49	1724	56	27	48.2143
ltrigg-rtg2	INDEL	I6_15	*	homalt	98.7906	98.4933	99.0897	41.6927	6145	94	6096	56	49	87.5000
ndellapenna-hhga	SNP	tv	map_l100_m1_e0	*	99.2885	98.8123	99.7692	62.3765	24210	291	24210	56	24	42.8571
qzeng-custom	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	54.0984	0	0	0	56	0	0.0000

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