PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
71651-71700 / 86044 show all
gduggal-snapplatINDEL*func_cdshet
59.9589
51.8692
71.0383
65.2751
111103130530
0.0000
gduggal-snapvardINDELD6_15map_l125_m2_e1het
77.2841
88.7324
68.4524
86.1272
6381155335
66.0377
gduggal-snapplatSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
34.7826
47.6190
27.3973
95.0441
202220533
5.6604
gduggal-snapvardINDELD1_5HG002compoundhethomalt
75.8563
69.7595
83.1210
54.7550
203882615349
92.4528
gduggal-snapplatINDELI1_5map_l150_m1_e0*
82.5979
77.6680
88.1960
95.0708
393113396532
3.7736
ghariani-varprowlINDELD16_PLUSmap_siren*
63.0655
62.9371
63.1944
94.7137
9053915338
71.6981
ghariani-varprowlINDELD16_PLUSmap_sirenhet
72.0679
93.5897
58.5938
93.8343
735755338
71.6981
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.5249
95.8559
99.2531
52.1381
707830670435340
75.4717
jlack-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
94.1563
97.8654
90.7180
83.3187
596135185340
75.4717
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
92.8775
93.1174
92.6389
73.8277
690516675347
88.6792
jlack-gatkSNP*HG002complexvarhomalt
99.9456
99.9096
99.9816
19.7398
2883132612882845346
86.7925
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5086
99.8706
99.1491
56.7671
617686176532
3.7736
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.1302
99.5045
98.7588
79.7621
4217214217538
15.0943
jli-customINDEL*map_siren*
98.8895
98.5020
99.2800
80.4395
729911173085317
32.0755
hfeng-pmm2INDELD6_15HG002compoundhethomalt
47.5248
100.0000
31.1688
71.0526
240245352
98.1132
hfeng-pmm2INDELI16_PLUSHG002compoundhet*
94.8024
92.3472
97.3917
52.6892
197916419795352
98.1132
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2768
95.4919
99.1297
62.3353
603728560375343
81.1321
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2768
95.4919
99.1297
62.3353
603728560375343
81.1321
hfeng-pmm3INDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
92.1557
94.5865
89.8467
85.0129
629364695347
88.6792
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.2247
98.6289
99.8277
67.0916
3071642730716533
5.6604
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.2247
98.6289
99.8277
67.0916
3071642730716533
5.6604
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.3822
95.4389
99.4064
62.1615
887242488755352
98.1132
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6089
93.9727
99.3973
31.2378
873156087415352
98.1132
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.6089
93.9727
99.3973
31.2378
873156087415352
98.1132
raldana-dualsentieonSNPtvHG002complexvar*
99.8458
99.7136
99.9784
21.7224
2454477052453625318
33.9623
raldana-dualsentieonSNPtvsegdup*
99.5671
99.7656
99.3693
91.0002
8512208508546
11.1111
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.9933
91.3832
96.7568
85.7571
161215216115424
44.4444
ltrigg-rtg2SNPtvmap_l100_m1_e0het
98.7963
97.9633
99.6436
50.7412
1510331415098542
3.7037
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
77.1546
63.0485
99.3919
33.0569
8678508688265453
98.1481
mlin-fermikitINDELD1_5map_sirenhet
85.2572
76.0650
96.9765
74.1833
173254517325436
66.6667
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
73.5160
59.0220
97.4456
46.9644
2257156720605442
77.7778
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_triTR_51to200*
74.4043
72.9730
75.8929
83.4686
162601705448
88.8889
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
81.9603
79.1667
84.9582
78.0562
304803055443
79.6296
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
80.1325
95.2756
69.1429
50.8427
12161215440
74.0741
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
81.2239
74.1883
89.7338
67.9659
4571594725443
79.6296
ndellapenna-hhgaINDELD6_15*hetalt
65.7378
49.3394
98.4629
43.6387
4033414134595441
75.9259
ndellapenna-hhgaINDELI16_PLUSHG002complexvar*
92.7599
90.0688
95.6169
66.4762
117913011785428
51.8519
ndellapenna-hhgaINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
85.3568
80.3493
91.0299
77.5037
5521355485432
59.2593
ltrigg-rtg2INDELI16_PLUS*homalt
94.2470
92.2486
96.3340
45.0988
144012114195453
98.1481
ltrigg-rtg2SNP*map_l125_m1_e0het
98.5086
97.2457
99.8048
55.1586
2761078227610546
11.1111
qzeng-customINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
0.0000
96.5184
000540
0.0000
qzeng-customSNP*func_cds*
99.7598
99.8182
99.7016
28.7413
181173318040544
7.4074
qzeng-customINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
98.2222
98.4038
98.0413
45.0797
10481727035437
68.5185
jli-customINDELD16_PLUSHG002compoundhet*
96.5889
95.5575
97.6430
32.3191
223710422375453
98.1481
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.9179
98.5780
99.2602
53.6895
727910572455449
90.7407
jpowers-varprowlINDELI6_15map_siren*
66.5799
58.6885
76.9231
81.1897
1791261805453
98.1481
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
81.5154
91.4474
73.5294
93.1267
13913150543
5.5556
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.3384
99.1260
97.5632
72.9162
21551921625414
25.9259
jpowers-varprowlSNPtvmap_l100_m1_e0homalt
99.1519
98.9052
99.3999
66.3513
89449989445439
72.2222
jmaeng-gatkSNPtvmap_l250_m1_e0het
70.8070
56.4633
94.9200
96.9245
10097781009541
1.8519