PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71001-71050 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D6_15 | * | hetalt | 95.9844 | 92.8187 | 99.3737 | 29.7010 | 7587 | 587 | 7616 | 48 | 47 | 97.9167 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9793 | 94.9232 | 99.1263 | 57.7580 | 5441 | 291 | 5446 | 48 | 47 | 97.9167 | |
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | het | 98.2113 | 98.0458 | 98.3773 | 88.2203 | 2910 | 58 | 2910 | 48 | 29 | 60.4167 | |
| rpoplin-dv42 | SNP | ti | map_l250_m2_e0 | het | 98.3531 | 98.1868 | 98.5199 | 88.5673 | 3195 | 59 | 3195 | 48 | 29 | 60.4167 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | * | 97.9690 | 97.5995 | 98.3414 | 87.6309 | 2846 | 70 | 2846 | 48 | 32 | 66.6667 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | het | 98.1142 | 97.9247 | 98.3045 | 80.9258 | 2784 | 59 | 2783 | 48 | 1 | 2.0833 | |
| raldana-dualsentieon | SNP | tv | segdup | het | 99.3773 | 99.6595 | 99.0966 | 91.7904 | 5269 | 18 | 5265 | 48 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2771 | 98.9642 | 99.5919 | 45.6545 | 11752 | 123 | 11714 | 48 | 17 | 35.4167 | |
| ltrigg-rtg2 | INDEL | I1_5 | * | homalt | 99.7495 | 99.5797 | 99.9200 | 48.8836 | 60173 | 254 | 59955 | 48 | 38 | 79.1667 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7424 | 96.3145 | 99.2132 | 57.7581 | 6089 | 233 | 6053 | 48 | 28 | 58.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.7424 | 96.3145 | 99.2132 | 57.7581 | 6089 | 233 | 6053 | 48 | 28 | 58.3333 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 90.1218 | 83.8120 | 97.4590 | 87.8583 | 1605 | 310 | 1841 | 48 | 35 | 72.9167 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 49.0937 | 86.6667 | 34.2466 | 60.9626 | 13 | 2 | 25 | 48 | 1 | 2.0833 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.1272 | 97.5987 | 98.6615 | 84.6994 | 3536 | 87 | 3538 | 48 | 30 | 62.5000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.8101 | 60.7843 | 34.2466 | 81.0390 | 31 | 20 | 25 | 48 | 46 | 95.8333 | |
| ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | het | 96.5036 | 95.1592 | 97.8864 | 58.1922 | 2241 | 114 | 2223 | 48 | 17 | 35.4167 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 88.1449 | 83.3732 | 93.4959 | 66.1468 | 697 | 139 | 690 | 48 | 38 | 79.1667 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2263 | 99.6260 | 98.8298 | 49.0498 | 3996 | 15 | 4054 | 48 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9220 | 99.6855 | 98.1700 | 51.8185 | 2536 | 8 | 2575 | 48 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | het | 63.6557 | 48.8737 | 91.2568 | 79.7342 | 499 | 522 | 501 | 48 | 14 | 29.1667 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | * | 63.8147 | 51.4113 | 84.1060 | 79.6633 | 255 | 241 | 254 | 48 | 41 | 85.4167 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | * | 93.7786 | 91.3262 | 96.3664 | 84.5822 | 1274 | 121 | 1273 | 48 | 35 | 72.9167 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.2022 | 100.0000 | 96.4680 | 43.7034 | 1311 | 0 | 1311 | 48 | 32 | 66.6667 | |
| jli-custom | INDEL | D1_5 | * | hetalt | 97.3277 | 95.2367 | 99.5126 | 64.3126 | 9757 | 488 | 9801 | 48 | 46 | 95.8333 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3548 | 99.1736 | 99.5367 | 47.6794 | 10321 | 86 | 10312 | 48 | 43 | 89.5833 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6661 | 99.0033 | 92.5466 | 51.1010 | 596 | 6 | 596 | 48 | 47 | 97.9167 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.8671 | 92.3787 | 99.6294 | 28.3565 | 12715 | 1049 | 12903 | 48 | 48 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.8065 | 92.2605 | 99.6360 | 30.7769 | 12946 | 1086 | 13139 | 48 | 48 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 69.5297 | 59.6491 | 83.3333 | 65.9574 | 238 | 161 | 240 | 48 | 46 | 95.8333 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e0 | het | 94.8187 | 95.8115 | 93.8462 | 88.6430 | 732 | 32 | 732 | 48 | 26 | 54.1667 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002compoundhet | het | 96.9264 | 96.5856 | 97.2696 | 68.4720 | 1669 | 59 | 1710 | 48 | 21 | 43.7500 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6948 | 94.0803 | 99.4587 | 42.1375 | 8741 | 550 | 8820 | 48 | 47 | 97.9167 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6948 | 94.0803 | 99.4587 | 42.1375 | 8741 | 550 | 8820 | 48 | 47 | 97.9167 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1173 | 93.0761 | 99.3641 | 35.8818 | 7501 | 558 | 7500 | 48 | 48 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.1173 | 93.0761 | 99.3641 | 35.8818 | 7501 | 558 | 7500 | 48 | 48 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 94.5568 | 92.7515 | 96.4339 | 73.6698 | 1254 | 98 | 1298 | 48 | 47 | 97.9167 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.7489 | 95.0355 | 96.4732 | 75.4199 | 1340 | 70 | 1313 | 48 | 37 | 77.0833 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 89.7485 | 86.7769 | 92.9308 | 90.5838 | 630 | 96 | 631 | 48 | 4 | 8.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | het | 89.8280 | 86.6492 | 93.2489 | 90.9553 | 662 | 102 | 663 | 48 | 4 | 8.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 89.9101 | 86.7532 | 93.3054 | 91.0049 | 668 | 102 | 669 | 48 | 4 | 8.3333 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.7394 | 96.9504 | 96.5293 | 75.1304 | 1367 | 43 | 1335 | 48 | 39 | 81.2500 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 17.8914 | 14.8148 | 22.5806 | 56.6434 | 16 | 92 | 14 | 48 | 8 | 16.6667 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.9634 | 98.0991 | 99.8431 | 67.2451 | 30551 | 592 | 30551 | 48 | 17 | 35.4167 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.9634 | 98.0991 | 99.8431 | 67.2451 | 30551 | 592 | 30551 | 48 | 17 | 35.4167 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | * | 91.3750 | 84.3165 | 99.7232 | 79.9461 | 17295 | 3217 | 17291 | 48 | 27 | 56.2500 | |
| astatham-gatk | SNP | ti | map_l150_m2_e1 | * | 91.3679 | 84.3025 | 99.7259 | 80.0126 | 17470 | 3253 | 17466 | 48 | 27 | 56.2500 | |
| astatham-gatk | SNP | tv | map_l100_m2_e1 | * | 91.8357 | 85.0651 | 99.7773 | 71.9862 | 21507 | 3776 | 21503 | 48 | 16 | 33.3333 | |
| asubramanian-gatk | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 34.2466 | 0 | 0 | 0 | 48 | 0 | 0.0000 | ||
| asubramanian-gatk | SNP | tv | segdup | het | 97.9042 | 96.7657 | 99.0698 | 94.3222 | 5116 | 171 | 5112 | 48 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5826 | 97.4026 | 97.7633 | 76.4020 | 2100 | 56 | 2098 | 48 | 23 | 47.9167 | |