PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70901-70950 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 80.5715 | 75.2066 | 86.7606 | 55.0063 | 182 | 60 | 308 | 47 | 45 | 95.7447 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 37.9488 | 23.6006 | 96.7984 | 42.1136 | 624 | 2020 | 1421 | 47 | 47 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 53.4653 | 87.9042 | 0 | 0 | 54 | 47 | 11 | 23.4043 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m1_e0 | het | 60.6733 | 86.9565 | 46.5909 | 92.8397 | 40 | 6 | 41 | 47 | 20 | 42.5532 | |
| gduggal-bwavard | INDEL | I16_PLUS | * | homalt | 81.4493 | 70.7880 | 95.8916 | 51.4843 | 1105 | 456 | 1097 | 47 | 14 | 29.7872 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.6237 | 98.6866 | 98.5609 | 63.0877 | 3231 | 43 | 3219 | 47 | 44 | 93.6170 | |
| jli-custom | INDEL | I16_PLUS | HG002compoundhet | * | 95.4155 | 93.2338 | 97.7017 | 49.8529 | 1998 | 145 | 1998 | 47 | 42 | 89.3617 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.0932 | 95.6186 | 98.6140 | 50.2202 | 3339 | 153 | 3344 | 47 | 36 | 76.5957 | |
| jli-custom | SNP | tv | map_l125_m0_e0 | het | 98.4127 | 97.9096 | 98.9210 | 71.8623 | 4309 | 92 | 4309 | 47 | 14 | 29.7872 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.6596 | 99.0406 | 96.3166 | 82.8425 | 1342 | 13 | 1229 | 47 | 42 | 89.3617 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e0 | * | 93.8073 | 91.3743 | 96.3735 | 84.4642 | 1250 | 118 | 1249 | 47 | 34 | 72.3404 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4312 | 90.9091 | 73.7430 | 94.9535 | 130 | 13 | 132 | 47 | 9 | 19.1489 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.5525 | 99.0160 | 98.0933 | 59.8338 | 2415 | 24 | 2418 | 47 | 12 | 25.5319 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m1_e0 | het | 94.6866 | 95.7300 | 93.6658 | 88.0554 | 695 | 31 | 695 | 47 | 26 | 55.3191 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.2272 | 90.2128 | 96.4502 | 72.2490 | 1272 | 138 | 1277 | 47 | 13 | 27.6596 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0456 | 99.3353 | 98.7576 | 71.4856 | 3736 | 25 | 3736 | 47 | 45 | 95.7447 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.5651 | 93.9933 | 99.2815 | 52.4049 | 6494 | 415 | 6494 | 47 | 42 | 89.3617 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0456 | 99.3353 | 98.7576 | 71.4856 | 3736 | 25 | 3736 | 47 | 45 | 95.7447 | |
| ltrigg-rtg1 | SNP | * | map_l125_m0_e0 | * | 98.5751 | 97.4258 | 99.7517 | 64.2305 | 18886 | 499 | 18884 | 47 | 16 | 34.0426 | |
| ltrigg-rtg1 | SNP | tv | func_cds | * | 99.4080 | 99.8856 | 98.9350 | 27.2263 | 4366 | 5 | 4366 | 47 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | func_cds | het | 99.0291 | 99.8118 | 98.2586 | 27.7763 | 2652 | 5 | 2652 | 47 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.3578 | 97.1724 | 99.5724 | 43.1938 | 10791 | 314 | 10945 | 47 | 46 | 97.8723 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.1120 | 71.9512 | 64.6617 | 69.6347 | 118 | 46 | 86 | 47 | 43 | 91.4894 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.7760 | 79.8611 | 81.7121 | 72.0348 | 230 | 58 | 210 | 47 | 30 | 63.8298 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.7656 | 99.2084 | 88.8889 | 61.0497 | 376 | 3 | 376 | 47 | 46 | 97.8723 | |
| ckim-isaac | SNP | * | map_l150_m2_e0 | het | 74.2562 | 59.1914 | 99.6072 | 80.1907 | 11917 | 8216 | 11918 | 47 | 8 | 17.0213 | |
| ckim-isaac | SNP | tv | map_siren | het | 84.7375 | 73.6377 | 99.7775 | 56.9492 | 21067 | 7542 | 21072 | 47 | 12 | 25.5319 | |
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | het | 95.8049 | 96.1802 | 95.4325 | 92.0387 | 982 | 39 | 982 | 47 | 3 | 6.3830 | |
| egarrison-hhga | INDEL | D16_PLUS | HG002complexvar | homalt | 89.8612 | 94.8097 | 85.4037 | 66.1053 | 274 | 15 | 275 | 47 | 38 | 80.8511 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.2513 | 95.6140 | 94.8913 | 62.4643 | 872 | 40 | 873 | 47 | 32 | 68.0851 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.2028 | 81.7073 | 76.8473 | 78.8981 | 134 | 30 | 156 | 47 | 42 | 89.3617 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 80.9033 | 83.4146 | 78.5388 | 83.2569 | 171 | 34 | 172 | 47 | 28 | 59.5745 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 80.9033 | 83.4146 | 78.5388 | 83.2569 | 171 | 34 | 172 | 47 | 28 | 59.5745 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.4215 | 95.7225 | 99.1819 | 60.8518 | 5684 | 254 | 5698 | 47 | 44 | 93.6170 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.4322 | 97.6427 | 99.2345 | 66.5194 | 6089 | 147 | 6093 | 47 | 18 | 38.2979 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 70.6250 | 95.1427 | 0 | 0 | 113 | 47 | 42 | 89.3617 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 70.6250 | 95.1427 | 0 | 0 | 113 | 47 | 42 | 89.3617 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.4797 | 95.7302 | 99.2944 | 52.9989 | 6614 | 295 | 6614 | 47 | 42 | 89.3617 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5323 | 99.5000 | 99.5646 | 79.8322 | 10747 | 54 | 10747 | 47 | 15 | 31.9149 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | het | 98.1505 | 98.3893 | 97.9130 | 86.6398 | 2199 | 36 | 2205 | 47 | 10 | 21.2766 | |
| mlin-fermikit | INDEL | I1_5 | map_siren | het | 82.5666 | 72.2784 | 96.2698 | 75.1037 | 1215 | 466 | 1213 | 47 | 36 | 76.5957 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4672 | 99.8135 | 97.1567 | 54.5004 | 1606 | 3 | 1606 | 47 | 36 | 76.5957 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 53.2117 | 92.5926 | 37.3333 | 95.7069 | 25 | 2 | 28 | 47 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4030 | 99.1198 | 99.6877 | 55.5385 | 14640 | 130 | 15005 | 47 | 23 | 48.9362 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m1_e0 | * | 89.8865 | 83.4416 | 97.4105 | 87.5446 | 1542 | 306 | 1768 | 47 | 35 | 74.4681 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.8699 | 99.5676 | 98.1818 | 59.8602 | 2533 | 11 | 2538 | 47 | 2 | 4.2553 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 88.9582 | 95.4751 | 83.2740 | 92.7259 | 211 | 10 | 234 | 47 | 4 | 8.5106 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.3920 | 94.7368 | 77.7251 | 93.0040 | 144 | 8 | 164 | 47 | 4 | 8.5106 | |
| raldana-dualsentieon | INDEL | * | map_siren | het | 98.4968 | 98.0479 | 98.9497 | 80.0579 | 4420 | 88 | 4428 | 47 | 5 | 10.6383 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.5530 | 86.6267 | 94.8521 | 57.6727 | 868 | 134 | 866 | 47 | 35 | 74.4681 | |