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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1410 1411 1412 1413 1414 1415 1416 1417 1418 ... 1720 1721 » 70651-70700 / 86044 show all
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	89.1293	81.6555	98.1092	39.4326	2190	492	2283	44	37	84.0909
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	95.2832	91.6502	99.2161	44.8245	5565	507	5569	44	30	68.1818
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2667	99.3211	99.2123	71.8135	5559	38	5542	44	35	79.5455
ckim-dragen	INDEL	I1_5	HG002complexvar	homalt	99.7432	99.8141	99.6725	52.7072	13423	25	13390	44	44	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	96.2575	99.0755	93.5953	68.1797	643	6	643	44	44	100.0000
ckim-dragen	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.9137	96.7068	99.1511	64.1489	5139	175	5139	44	40	90.9091
ciseli-custom	INDEL	I1_5	map_l100_m2_e0	homalt	54.2174	40.3013	82.8125	83.8994	214	317	212	44	35	79.5455
ciseli-custom	INDEL	D1_5	map_l150_m1_e0	homalt	78.3964	77.1930	79.6380	89.0810	176	52	176	45	36	80.0000
ciseli-custom	INDEL	I1_5	map_l100_m2_e1	homalt	53.9043	40.0000	82.6255	84.1880	216	324	214	45	36	80.0000
ciseli-custom	INDEL	I6_15	map_siren	*	31.6781	21.6393	59.0909	84.5070	66	239	65	45	41	91.1111
ckim-isaac	INDEL	*	map_l100_m2_e1	*	81.7169	69.9148	98.3127	84.3697	2626	1130	2622	45	21	46.6667
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	54.6535	62.0000	48.8636	68.3453	31	19	43	45	30	66.6667
cchapple-custom	INDEL	C1_5	HG002compoundhet	*	95.6183	100.0000	91.6045	83.2080	1	0	491	45	7	15.5556
ckim-dragen	INDEL	D1_5	HG002complexvar	hetalt	94.4661	92.3817	96.6468	71.8658	1249	103	1297	45	45	100.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7343	99.6285	99.8404	58.9273	28155	105	28158	45	20	44.4444
ckim-gatk	INDEL	D1_5	map_l125_m0_e0	het	93.3136	98.8406	88.3721	92.6760	341	4	342	45	1	2.2222
ckim-dragen	INDEL	*	map_l125_m0_e0	*	95.5436	96.1451	94.9495	90.2750	848	34	846	45	8	17.7778
gduggal-bwavard	SNP	ti	func_cds	*	99.3703	99.0716	99.6707	28.1478	13659	128	13622	45	15	33.3333
gduggal-bwavard	SNP	ti	func_cds	het	99.2690	99.0710	99.4677	32.1944	8425	79	8409	45	15	33.3333
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	46.9083	32.3849	85.0498	32.2072	387	808	256	45	39	86.6667
eyeh-varpipe	INDEL	C6_15	HG002compoundhet	*	0.0000	0.0000	65.6489	85.9893	0	0	86	45	39	86.6667
eyeh-varpipe	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	65.1949	54.6559	80.7692	61.1940	135	112	189	45	43	95.5556
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	88.0110	96.4467	80.9322	61.2479	190	7	191	45	38	84.4444
gduggal-bwafb	INDEL	I16_PLUS	HG002complexvar	*	65.8380	50.7257	93.7759	46.3252	664	645	678	45	44	97.7778
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	79.5287	70.4992	91.2109	53.4545	1864	780	467	45	45	100.0000
gduggal-bwaplat	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	90.5878	82.9794	99.7323	63.7829	16761	3438	16763	45	38	84.4444
gduggal-bwaplat	SNP	ti	map_l125_m0_e0	het	68.0749	51.8819	98.9622	92.4159	4287	3976	4291	45	14	31.1111
gduggal-bwaplat	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	90.3792	84.8945	96.6216	83.4493	1287	229	1287	45	5	11.1111
gduggal-bwafb	INDEL	*	map_l100_m1_e0	het	95.9196	93.9597	97.9629	82.4460	2100	135	2164	45	7	15.5556
gduggal-bwafb	INDEL	*	map_l100_m2_e0	het	95.9110	93.8882	98.0228	83.5180	2166	141	2231	45	7	15.5556
jmaeng-gatk	INDEL	I6_15	HG002complexvar	homalt	98.1392	99.9176	96.4229	55.6886	1213	1	1213	45	45	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.2881	95.5213	99.1216	64.1698	5076	238	5078	45	35	77.7778
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.3724	94.0724	98.7877	56.0658	3666	231	3667	45	39	86.6667
jpowers-varprowl	INDEL	*	map_l125_m0_e0	het	92.6995	93.0153	92.3858	91.5475	546	41	546	45	27	60.0000
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	77.9143	85.8268	71.3376	72.6003	109	18	112	45	44	97.7778
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7095	99.5789	99.8404	58.9584	28141	119	28144	45	19	42.2222
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	94.5713	92.7921	96.4200	59.1883	1223	95	1212	45	44	97.7778
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	95.6226	93.3223	98.0392	55.3589	2250	161	2250	45	42	93.3333
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.1976	99.0717	99.3238	51.2490	6617	62	6610	45	42	93.3333
ltrigg-rtg1	SNP	ti	map_l100_m0_e0	*	98.9181	98.0616	99.7897	58.0234	21349	422	21353	45	17	37.7778
jpowers-varprowl	INDEL	D6_15	segdup	het	74.3119	88.0435	64.2857	94.1066	81	11	81	45	45	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.0481	94.6421	99.5798	42.9211	10510	595	10663	45	44	97.7778
jlack-gatk	INDEL	D1_5	HG002complexvar	hetalt	93.7719	91.1243	96.5779	72.4607	1232	120	1270	45	42	93.3333
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	89.3112	100.0000	80.6867	66.4748	188	0	188	45	44	97.7778
jlack-gatk	SNP	*	map_siren	homalt	99.6008	99.2857	99.9179	50.5286	54762	394	54753	45	30	66.6667
jli-custom	INDEL	*	map_l100_m2_e0	*	98.4246	98.0774	98.7742	83.9477	3622	71	3626	45	15	33.3333
jli-custom	INDEL	*	map_l100_m2_e1	*	98.4239	98.0564	98.7942	84.0281	3683	73	3687	45	15	33.3333
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.9613	99.3365	98.5889	49.3810	3144	21	3144	45	43	95.5556
hfeng-pmm2	SNP	tv	HG002complexvar	het	99.7540	99.5389	99.9700	20.7785	150036	695	149957	45	8	17.7778
hfeng-pmm1	SNP	*	map_siren	homalt	99.8994	99.8803	99.9184	53.4037	55090	66	55084	45	26	57.7778

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