PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
7001-7050 / 86044 show all
qzeng-customINDEL*map_l100_m0_e0hetalt
91.8033
84.8485
100.0000
94.3038
285900
qzeng-customINDEL*map_l100_m1_e0hetalt
86.2385
75.8065
100.0000
90.2527
94302700
qzeng-customINDEL*map_l100_m2_e0hetalt
85.8447
75.2000
100.0000
91.2621
94312700
qzeng-customINDEL*map_l100_m2_e1hetalt
85.7143
75.0000
100.0000
91.4013
99332700
qzeng-customINDEL*map_l125_m0_e0hetalt
84.2105
72.7273
100.0000
97.6190
83300
qzeng-customINDEL*map_l125_m1_e0hetalt
87.3239
77.5000
100.0000
92.6941
3191600
qzeng-customINDEL*map_l125_m2_e0hetalt
88.0000
78.5714
100.0000
93.2000
3391700
qzeng-customINDEL*map_l125_m2_e1hetalt
86.8421
76.7442
100.0000
93.2806
33101700
qzeng-customINDEL*map_l150_m0_e0hetalt
66.6667
100.0000
63000
qzeng-customINDEL*map_l150_m1_e0hetalt
80.0000
66.6667
100.0000
96.6102
147600
qzeng-customINDEL*map_l150_m2_e0hetalt
80.0000
66.6667
100.0000
96.5517
147700
qzeng-customINDEL*map_l150_m2_e1hetalt
78.9474
65.2174
100.0000
96.5854
158700
qzeng-customINDEL*map_l250_m0_e0hetalt
0.0000
100.0000
00000
qzeng-customINDEL*map_l250_m0_e0homalt
64.8649
48.0000
100.0000
98.4526
12132400
qzeng-customINDEL*map_l250_m1_e0hetalt
90.9091
83.3333
100.0000
99.1870
51100
qzeng-customINDEL*map_l250_m2_e0hetalt
90.9091
83.3333
100.0000
97.7444
51300
qzeng-customINDEL*map_l250_m2_e1hetalt
90.9091
83.3333
100.0000
97.7778
51300
qzeng-customINDEL*map_sirenhetalt
87.7273
78.1377
100.0000
88.1671
193545100
qzeng-customINDEL*segduphetalt
89.8305
81.5385
100.0000
96.1039
106242400
qzeng-customINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9977
10100
qzeng-customINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9969
10100
qzeng-customINDEL*segdupwithalthetalt
0.0000
100.0000
00000
qzeng-customINDEL*segdupwithalthomalt
0.0000
100.0000
00000
qzeng-customINDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
66.6667
40200
qzeng-customINDELC16_PLUS*hetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSHG002complexvarhetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSHG002compoundhethetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSdecoyhetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSdecoyhomalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
100.0000
00000