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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1403 1404 1405 1406 1407 1408 1409 1410 1411 ... 1720 1721 » 70301-70350 / 86044 show all
gduggal-bwavard	INDEL	I1_5	map_l100_m0_e0	*	93.4216	94.4751	92.3913	87.7849	513	30	510	42	14	33.3333
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	81.4778	87.2727	76.4045	92.1551	144	21	136	42	8	19.0476
gduggal-bwavard	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	97.5587	96.4058	98.7395	42.1025	3326	124	3290	42	14	33.3333
gduggal-snapfb	INDEL	*	map_l125_m0_e0	het	91.8622	90.9710	92.7711	85.6224	534	53	539	42	9	21.4286
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	85.2150	75.8321	97.2477	53.3761	1481	472	1484	42	37	88.0952
gduggal-bwavard	INDEL	C16_PLUS	HG002complexvar	het	0.0000	0.0000	47.5000	88.2353	0	0	38	42	8	19.0476
gduggal-bwavard	INDEL	C1_5	map_l100_m2_e0	*	0.0000	0.0000	55.7895	95.3086	0	0	53	42	4	9.5238
gduggal-bwavard	INDEL	C1_5	map_l100_m2_e0	het	0.0000	0.0000	46.1538	95.6594	0	0	36	42	4	9.5238
gduggal-bwavard	INDEL	C1_5	map_l100_m2_e1	*	0.0000	0.0000	56.2500	95.3466	0	0	54	42	4	9.5238
gduggal-bwavard	INDEL	C1_5	map_l100_m2_e1	het	0.0000	0.0000	46.8354	95.6807	0	0	37	42	4	9.5238
gduggal-bwavard	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	16.6415	14.6667	19.2308	69.7674	11	64	10	42	38	90.4762
gduggal-bwavard	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	het	31.3390	84.6154	19.2308	69.2308	11	2	10	42	38	90.4762
egarrison-hhga	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.2365	97.8780	98.5977	69.1078	2952	64	2953	42	11	26.1905
egarrison-hhga	SNP	*	map_l125_m0_e0	het	98.9341	98.2154	99.6635	75.5931	12438	226	12438	42	17	40.4762
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
egarrison-hhga	SNP	ti	map_l150_m2_e1	*	99.3895	98.9866	99.7957	75.2728	20513	210	20513	42	20	47.6190
egarrison-hhga	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4577	99.1576	99.7596	63.2532	17420	148	17430	42	21	50.0000
eyeh-varpipe	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	0.0000	0.0000	40.0000	93.0830	0	0	28	42	14	33.3333
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	91.0304	84.2624	98.9806	25.8726	4021	751	4078	42	35	83.3333
dgrover-gatk	INDEL	*	map_l100_m0_e0	*	97.7081	98.0806	97.3384	87.7968	1533	30	1536	42	9	21.4286
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.0391	99.4096	96.7059	82.8744	1347	8	1233	42	28	66.6667
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	94.3538	99.2084	89.9522	60.9346	376	3	376	42	42	100.0000
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	het	65.6716	66.6667	64.7059	89.5246	68	34	77	42	4	9.5238
egarrison-hhga	INDEL	*	segdup	het	97.9069	98.6357	97.1888	94.2947	1446	20	1452	42	30	71.4286
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	73.8603	58.8768	99.0735	33.2105	4812	3361	4491	42	36	85.7143
ckim-vqsr	SNP	*	HG002compoundhet	*	98.9056	97.9940	99.8343	41.9777	25304	518	25301	42	32	76.1905
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.1945	95.5607	98.8851	56.8401	3724	173	3725	42	35	83.3333
hfeng-pmm1	INDEL	D6_15	HG002compoundhet	homalt	53.3333	100.0000	36.3636	67.8049	24	0	24	42	42	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.9167	99.3224	98.5143	47.0103	2785	19	2785	42	42	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0239	99.3681	98.6821	49.3000	3145	20	3145	42	42	100.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.8162	96.8548	98.7969	68.2925	3449	112	3449	42	28	66.6667
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	74.0454	79.7297	69.1176	73.4893	118	30	94	42	42	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	98.3558	97.1558	99.5859	47.3310	10111	296	10101	42	37	88.0952
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	75.1699	81.7568	69.5652	72.8346	121	27	96	42	42	100.0000
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	95.6093	91.9316	99.5935	30.0616	10209	896	10290	42	37	88.0952
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.6208	90.1948	99.5035	32.1162	8380	911	8417	42	38	90.4762
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6208	90.1948	99.5035	32.1162	8380	911	8417	42	38	90.4762
jlack-gatk	INDEL	D6_15	HG002complexvar	hetalt	92.4487	89.3386	95.7831	48.0438	905	108	954	42	37	88.0952
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.6297	90.2717	99.4297	29.8103	7275	784	7323	42	36	85.7143
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6297	90.2717	99.4297	29.8103	7275	784	7323	42	36	85.7143
jlack-gatk	INDEL	I1_5	HG002complexvar	homalt	99.7623	99.8364	99.6883	53.0964	13426	22	13432	42	40	95.2381
jlack-gatk	INDEL	I1_5	map_l125_m1_e0	het	94.8373	97.9424	91.9231	91.0821	476	10	478	42	2	4.7619
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4485	99.9742	98.9283	61.3587	3877	1	3877	42	1	2.3810
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.1650	100.0000	98.3438	63.2517	2494	0	2494	42	1	2.3810
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	98.5662	98.6750	98.4576	87.8962	2681	36	2681	42	24	57.1429
jli-custom	INDEL	*	map_l100_m1_e0	*	98.4897	98.1595	98.8222	83.0077	3520	66	3524	42	15	35.7143
cchapple-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	96.7046	95.7031	97.7273	60.0519	1715	77	1806	42	37	88.0952
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	66.4160	55.2083	83.3333	76.5144	212	172	210	42	31	73.8095
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	28.3794	25.3333	32.2581	67.7083	19	56	20	42	24	57.1429

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