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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1388 1389 1390 1391 1392 1393 1394 1395 1396 ... 1720 1721 » 69551-69600 / 86044 show all
astatham-gatk	SNP	ti	map_l100_m0_e0	het	88.3269	79.3034	99.6674	77.0849	11089	2894	11086	37	16	43.2432
astatham-gatk	SNP	tv	HG002complexvar	*	99.1122	98.2547	99.9847	22.3181	241856	4296	241769	37	21	56.7568
astatham-gatk	SNP	tv	map_l100_m1_e0	het	86.5303	76.4416	99.6869	75.5609	11785	3632	11781	37	10	27.0270
astatham-gatk	SNP	tv	map_l100_m2_e0	het	86.7029	76.7066	99.6951	76.6657	12102	3675	12098	37	10	27.0270
asubramanian-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*		0.0000	0.0000	85.0806	0	0	0	37	0	0.0000
asubramanian-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	76.5823	0	0	0	37	0	0.0000
asubramanian-gatk	INDEL	D16_PLUS	*	hetalt	95.6218	93.1712	98.2048	39.4536	1801	132	2024	37	31	83.7838
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	95.6445	93.2160	98.2030	39.3698	1800	131	2022	37	31	83.7838
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	95.6445	93.2160	98.2030	39.3698	1800	131	2022	37	31	83.7838
anovak-vg	INDEL	*	map_l250_m2_e0	homalt	72.3983	74.7826	70.1613	95.5950	86	29	87	37	34	91.8919
anovak-vg	INDEL	*	map_l250_m2_e1	homalt	72.6272	75.0000	70.4000	95.6911	87	29	88	37	34	91.8919
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	90.6611	90.9091	90.4145	54.4274	340	34	349	37	21	56.7568
cchapple-custom	SNP	*	HG002complexvar	homalt	99.8273	99.6680	99.9871	18.5601	287616	958	286343	37	32	86.4865
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.2560	99.0686	99.4441	78.7870	6595	62	6619	37	15	40.5405
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.0491	98.9618	99.1365	81.8417	4194	44	4248	37	15	40.5405
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6346	99.4826	99.7870	59.5165	16344	85	17330	37	22	59.4595
cchapple-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	96.3322	95.2381	97.4518	62.1184	580	29	1415	37	32	86.4865
cchapple-custom	INDEL	D1_5	map_l100_m0_e0	*	96.2312	96.7555	95.7126	83.6954	835	28	826	37	5	13.5135
ciseli-custom	SNP	*	lowcmp_SimpleRepeat_triTR_51to200	*	31.2655	77.7778	19.5652	86.4307	7	2	9	37	2	5.4054
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5579	99.4508	99.6651	63.3945	11047	61	11012	37	16	43.2432
ckim-dragen	INDEL	*	map_l125_m0_e0	het	94.7671	95.7411	93.8127	91.0559	562	25	561	37	3	8.1081
ckim-dragen	INDEL	D1_5	map_l125_m2_e0	het	96.3746	97.5131	95.2625	88.9141	745	19	744	37	3	8.1081
ckim-dragen	INDEL	D1_5	map_l125_m2_e1	het	96.4026	97.5325	95.2986	89.0022	751	19	750	37	3	8.1081
ckim-dragen	INDEL	D6_15	*	hetalt	96.4645	93.5894	99.5217	32.8589	7650	524	7699	37	37	100.0000
ckim-dragen	SNP	*	map_l100_m2_e0	homalt	99.6377	99.4114	99.8650	58.3933	27361	162	27366	37	33	89.1892
ckim-dragen	SNP	*	map_l100_m2_e1	homalt	99.6376	99.4100	99.8663	58.3837	27632	164	27637	37	33	89.1892
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.6722	93.9296	99.5798	30.8791	8727	564	8769	37	37	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.6722	93.9296	99.5798	30.8791	8727	564	8769	37	37	100.0000
ckim-gatk	INDEL	D1_5	segdup	*	98.1263	99.5467	96.7458	96.0214	1098	5	1100	37	2	5.4054
ckim-gatk	INDEL	D6_15	HG002complexvar	hetalt	93.7593	91.3129	96.3403	47.3985	925	88	974	37	37	100.0000
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	88.6568	87.8116	89.5184	60.6466	317	44	316	37	30	81.0811
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	63.1287	83.7209	50.6667	72.8261	36	7	38	37	25	67.5676
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	79.2924	78.0000	80.6283	58.3878	156	44	154	37	34	91.8919
ckim-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.5789	95.9353	99.2797	63.8316	5098	216	5100	37	30	81.0811
ckim-gatk	SNP	*	HG002complexvar	homalt	99.2945	98.6114	99.9870	20.0389	284567	4007	284543	37	31	83.7838
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.9212	94.7708	99.1715	26.5340	4404	243	4429	37	35	94.5946
egarrison-hhga	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	87.7109	81.5789	94.8396	65.2279	682	154	680	37	31	83.7838
egarrison-hhga	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	94.5419	90.7051	98.7175	44.4016	2830	290	2848	37	34	91.8919
egarrison-hhga	SNP	*	map_l150_m0_e0	*	99.0549	98.4292	99.6886	78.8145	11843	189	11843	37	16	43.2432
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5195	99.4061	99.6332	48.7604	10042	60	10049	37	25	67.5676
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	93.2051	91.0693	95.4433	86.0265	775	76	775	37	12	32.4324
eyeh-varpipe	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	0.0000	0.0000	39.3443	96.5321	0	0	24	37	22	59.4595
dgrover-gatk	SNP	*	HG002complexvar	homalt	99.9653	99.9435	99.9872	19.8551	288411	163	288386	37	35	94.5946
ckim-isaac	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	87.8990	80.2937	97.0958	47.6367	1039	255	1237	37	31	83.7838
ckim-isaac	INDEL	D1_5	HG002compoundhet	homalt	74.1154	66.3230	83.9827	64.7328	193	98	194	37	34	91.8919
ckim-isaac	INDEL	D1_5	map_siren	het	90.2008	83.4870	98.0888	79.1671	1901	376	1899	37	14	37.8378
ckim-isaac	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	95.0368	92.4855	97.7328	30.1370	1600	130	1595	37	31	83.7838
dgrover-gatk	INDEL	*	map_l125_m2_e0	*	98.3167	98.3151	98.3182	89.0905	2159	37	2163	37	8	21.6216
dgrover-gatk	INDEL	*	map_l125_m2_e1	*	98.3157	98.2921	98.3393	89.1708	2187	38	2191	37	8	21.6216
ckim-isaac	SNP	ti	map_l125_m1_e0	*	74.8103	59.8330	99.7896	70.2803	17552	11783	17552	37	7	18.9189

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