PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69151-69200 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | * | map_l125_m1_e0 | * | 98.3163 | 98.2914 | 98.3412 | 88.3670 | 2071 | 36 | 2075 | 35 | 8 | 22.8571 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1103 | 98.0341 | 98.1865 | 65.1058 | 1895 | 38 | 1895 | 35 | 35 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.7011 | 99.6968 | 99.7054 | 51.0387 | 11839 | 36 | 11844 | 35 | 16 | 45.7143 | |
| dgrover-gatk | INDEL | I6_15 | HG002complexvar | homalt | 98.5378 | 99.9176 | 97.1955 | 55.8074 | 1213 | 1 | 1213 | 35 | 35 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5363 | 99.2878 | 99.7860 | 56.6980 | 16312 | 117 | 16318 | 35 | 21 | 60.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.6052 | 94.2754 | 99.0530 | 53.1678 | 3656 | 222 | 3661 | 35 | 17 | 48.5714 | |
| ckim-isaac | SNP | tv | map_l100_m1_e0 | * | 75.3790 | 60.5730 | 99.7648 | 65.1235 | 14841 | 9660 | 14844 | 35 | 12 | 34.2857 | |
| ckim-vqsr | INDEL | * | map_l125_m0_e0 | het | 95.3743 | 96.5928 | 94.1860 | 94.0596 | 567 | 20 | 567 | 35 | 1 | 2.8571 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.0522 | 92.1444 | 96.0407 | 70.6215 | 868 | 74 | 849 | 35 | 23 | 65.7143 | |
| egarrison-hhga | SNP | ti | map_l150_m2_e1 | het | 99.1616 | 98.6016 | 99.7280 | 76.3347 | 12833 | 182 | 12833 | 35 | 13 | 37.1429 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 16.5740 | 9.2050 | 83.0918 | 78.3246 | 110 | 1085 | 172 | 35 | 24 | 68.5714 | |
| eyeh-varpipe | INDEL | * | map_l150_m1_e0 | het | 96.7203 | 96.6082 | 96.8326 | 87.6550 | 826 | 29 | 1070 | 35 | 18 | 51.4286 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e0 | het | 96.7930 | 96.5784 | 97.0085 | 88.1973 | 875 | 31 | 1135 | 35 | 18 | 51.4286 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e1 | het | 96.7897 | 96.5368 | 97.0439 | 88.2865 | 892 | 32 | 1149 | 35 | 18 | 51.4286 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 94.3685 | 96.3964 | 92.4242 | 70.2894 | 428 | 16 | 427 | 35 | 32 | 91.4286 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | * | 98.0898 | 97.9887 | 98.1912 | 83.7299 | 1900 | 39 | 1900 | 35 | 13 | 37.1429 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 63.1996 | 46.4567 | 98.8107 | 36.5459 | 3304 | 3808 | 2908 | 35 | 31 | 88.5714 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.6301 | 80.4167 | 91.5663 | 79.3430 | 386 | 94 | 380 | 35 | 19 | 54.2857 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 91.7822 | 88.7139 | 95.0704 | 56.7337 | 676 | 86 | 675 | 35 | 23 | 65.7143 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.7431 | 89.6335 | 96.0762 | 74.1823 | 856 | 99 | 857 | 35 | 22 | 62.8571 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | * | het | 97.5719 | 96.3280 | 98.8483 | 63.0112 | 3043 | 116 | 3004 | 35 | 15 | 42.8571 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.3219 | 93.9577 | 94.6889 | 71.3603 | 622 | 40 | 624 | 35 | 5 | 14.2857 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4473 | 99.1113 | 99.7856 | 56.2027 | 16283 | 146 | 16290 | 35 | 23 | 65.7143 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.6796 | 98.9777 | 98.3834 | 43.8974 | 2130 | 22 | 2130 | 35 | 21 | 60.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7349 | 99.8133 | 99.6566 | 54.0176 | 10159 | 19 | 10157 | 35 | 30 | 85.7143 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 64.0965 | 47.4352 | 98.7989 | 37.2929 | 3403 | 3771 | 2879 | 35 | 30 | 85.7143 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6252 | 94.1534 | 99.2303 | 30.5059 | 4493 | 279 | 4512 | 35 | 32 | 91.4286 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5881 | 92.6230 | 92.5532 | 80.7456 | 452 | 36 | 435 | 35 | 16 | 45.7143 | |
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | het | 98.6644 | 97.6395 | 99.7111 | 73.7513 | 12078 | 292 | 12078 | 35 | 17 | 48.5714 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.8914 | 94.3741 | 97.4582 | 84.3416 | 1342 | 80 | 1342 | 35 | 25 | 71.4286 | |
| qzeng-custom | INDEL | * | func_cds | * | 95.4248 | 98.4270 | 92.6004 | 43.9573 | 438 | 7 | 438 | 35 | 4 | 11.4286 | |
| qzeng-custom | INDEL | * | map_l250_m2_e1 | * | 75.9087 | 66.0661 | 89.1975 | 97.9280 | 220 | 113 | 289 | 35 | 17 | 48.5714 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m1_e0 | * | 98.9923 | 98.1217 | 99.8786 | 58.7041 | 28784 | 551 | 28785 | 35 | 10 | 28.5714 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e0 | het | 98.5679 | 97.3564 | 99.8099 | 58.2477 | 18377 | 499 | 18379 | 35 | 4 | 11.4286 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e1 | het | 98.5813 | 97.3804 | 99.8121 | 58.3672 | 18587 | 500 | 18589 | 35 | 4 | 11.4286 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 88.7180 | 93.5323 | 84.3750 | 85.4922 | 188 | 13 | 189 | 35 | 17 | 48.5714 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | het | 76.7833 | 64.0379 | 95.8629 | 77.1351 | 812 | 456 | 811 | 35 | 19 | 54.2857 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | het | 76.0958 | 77.0370 | 75.1773 | 80.9202 | 104 | 31 | 106 | 35 | 25 | 71.4286 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.8643 | 90.1961 | 73.2824 | 95.0076 | 92 | 10 | 96 | 35 | 8 | 22.8571 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5765 | 99.1813 | 96.0227 | 68.9046 | 848 | 7 | 845 | 35 | 2 | 5.7143 | |
| qzeng-custom | SNP | tv | map_l150_m2_e1 | homalt | 82.0801 | 70.1984 | 98.8034 | 73.9699 | 2902 | 1232 | 2890 | 35 | 35 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | * | 97.8027 | 97.2222 | 98.3901 | 85.9597 | 2135 | 61 | 2139 | 35 | 6 | 17.1429 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e1 | * | 97.8083 | 97.2135 | 98.4105 | 86.0853 | 2163 | 62 | 2167 | 35 | 6 | 17.1429 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3975 | 98.7234 | 98.0737 | 43.5889 | 464 | 6 | 1782 | 35 | 13 | 37.1429 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.7699 | 98.6301 | 94.9785 | 83.2774 | 864 | 12 | 662 | 35 | 33 | 94.2857 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 54.5455 | 52.9412 | 56.2500 | 93.9440 | 45 | 40 | 45 | 35 | 16 | 45.7143 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 32.7016 | 22.2672 | 61.5385 | 82.5000 | 55 | 192 | 56 | 35 | 29 | 82.8571 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | het | 93.0816 | 95.6012 | 90.6915 | 92.2394 | 326 | 15 | 341 | 35 | 5 | 14.2857 | |
| ckim-dragen | SNP | tv | map_l250_m0_e0 | * | 95.6975 | 95.9477 | 95.4486 | 93.6441 | 734 | 31 | 734 | 35 | 5 | 14.2857 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 91.5697 | 99.0099 | 85.1695 | 94.5522 | 200 | 2 | 201 | 35 | 0 | 0.0000 | |