PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
6851-6900 / 86044 show all
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.7368
20200
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
90.0000
1201200
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
91.6667
10100
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
90.9091
83.3333
100.0000
95.2830
51500
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
81.8182
20200
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
85.2459
74.2857
100.0000
90.4762
2692600
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_51to200*
85.7143
75.0000
100.0000
95.4545
62500
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_51to200het
90.9091
83.3333
100.0000
95.4023
51400
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
95.6522
11100
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtimap_l125_m0_e0hetalt
85.7143
75.0000
100.0000
83.7838
62600
ndellapenna-hhgaSNPtimap_l125_m1_e0hetalt
90.9091
83.3333
100.0000
75.9036
2042000
ndellapenna-hhgaSNPtimap_l125_m2_e0hetalt
90.9091
83.3333
100.0000
80.0000
2042000
ndellapenna-hhgaSNPtimap_l125_m2_e1hetalt
90.9091
83.3333
100.0000
80.1980
2042000
ndellapenna-hhgaSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
ndellapenna-hhgaSNPtimap_l150_m1_e0hetalt
88.8889
80.0000
100.0000
81.2500
1231200
ndellapenna-hhgaSNPtimap_l150_m2_e0hetalt
88.8889
80.0000
100.0000
84.4156
1231200
ndellapenna-hhgaSNPtimap_l150_m2_e1hetalt
88.8889
80.0000
100.0000
84.6154
1231200
ndellapenna-hhgaSNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtimap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
93.1034
22200
ndellapenna-hhgaSNPtimap_l250_m2_e0hetalt
75.0000
60.0000
100.0000
91.4286
32300
ndellapenna-hhgaSNPtimap_l250_m2_e1hetalt
75.0000
60.0000
100.0000
91.4286
32300
ndellapenna-hhgaSNPtisegduphetalt
100.0000
100.0000
100.0000
99.0698
20200