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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
68851-68900 / 86044 show all
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
16.2560
11.4094
28.2609
78.7037
1713213330
0.0000
astatham-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9355
96.4181
99.5014
33.6275
656824465853332
96.9697
astatham-gatkSNPtv*homalt
99.9694
99.9475
99.9912
19.9071
3769251983769103326
78.7879
astatham-gatkSNPtvmap_l125_m0_e0*
93.2991
87.8751
99.4368
79.1316
58278045826339
27.2727
astatham-gatkSNPtvmap_l125_m1_e0het
86.0971
75.8345
99.5720
79.9490
767924477677338
24.2424
astatham-gatkSNPtvmap_l125_m2_e0het
86.2155
76.0103
99.5858
81.0010
793725057935338
24.2424
astatham-gatkSNPtvmap_l125_m2_e1het
86.2148
76.0068
99.5902
81.0461
802125328019338
24.2424
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.4659
95.6210
97.3258
79.6370
12015512013310
30.3030
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.3035
98.8131
99.7988
59.4317
1623419516370333
9.0909
asubramanian-gatkINDEL*map_l250_m1_e0*
86.4236
84.2623
88.6986
99.0516
25748259333
9.0909
asubramanian-gatkINDEL*map_l250_m2_e0*
86.7966
84.2900
89.4569
99.1194
27952280333
9.0909
asubramanian-gatkINDEL*map_l250_m2_e1*
86.7031
84.0841
89.4904
99.1381
28053281333
9.0909
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.4825
93.0118
98.0881
33.9962
150411316933328
84.8485
anovak-vgINDELI1_5map_l250_m2_e0homalt
68.7117
88.8889
56.0000
95.0723
405423330
90.9091
anovak-vgINDELI1_5map_l250_m2_e1homalt
69.2187
89.1304
56.5789
95.1592
415433330
90.9091
anovak-vgINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200het
20.7254
14.2857
37.7358
50.4673
530203329
87.8788
bgallagher-sentieonINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.5355
100.0000
95.1895
73.1086
65306533332
96.9697
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7043
99.9506
99.4592
57.8271
6069360693332
96.9697
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.8780
94.3944
99.4959
25.6896
650038665133333
100.0000
asubramanian-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.1590
93.4295
99.0528
42.4608
291520534513331
93.9394
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.2667
91.9260
98.8593
33.2487
233420528603331
93.9394
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.1496
91.6793
98.8930
34.8700
242422029483331
93.9394
asubramanian-gatkSNP*map_l125_m2_e0het
50.9572
34.2281
99.6721
92.5837
100351928310032338
24.2424
asubramanian-gatkSNP*map_l125_m2_e1het
51.2109
34.4568
99.6778
92.5521
102131942710210338
24.2424
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
86.3781
85.6589
87.1094
66.0027
221372233321
63.6364
anovak-vgINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
21.8978
16.8539
31.2500
56.7568
1574153319
57.5758
rpoplin-dv42INDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
97.4301
97.2854
97.5753
76.8498
13263713283332
96.9697
rpoplin-dv42SNP*map_l150_m2_e0homalt
99.3437
98.9743
99.7158
73.6127
11579120115793332
96.9697
rpoplin-dv42SNP*map_l150_m2_e1homalt
99.3508
98.9854
99.7189
73.6505
11707120117073332
96.9697
raldana-dualsentieonSNPti*homalt
99.9899
99.9839
99.9959
15.7711
8029091298029013332
96.9697
rpoplin-dv42INDEL*map_l125_m2_e1*
98.0600
97.6180
98.5061
98.7184
21725321763314
42.4242
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.1097
95.4459
92.8105
80.6084
503244263333
100.0000
ckim-vqsrSNPtimap_l250_m2_e0*
59.5430
42.6717
98.4793
97.0358
213728712137330
0.0000
ckim-vqsrSNPtimap_l250_m2_e0het
69.6152
53.9336
98.1544
97.0778
175514991755330
0.0000
dgrover-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9811
96.5062
99.5018
33.8856
657423865913332
96.9697
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
94.4183
93.3511
95.5102
59.6597
702507023322
66.6667
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.5379
95.4068
95.6693
67.9563
727357293324
72.7273
egarrison-hhgaINDELD1_5map_l100_m1_e0*
98.0764
97.9437
98.2094
82.9273
18103818103312
36.3636
egarrison-hhgaINDELD1_5map_l100_m2_e0*
98.1438
98.0157
98.2723
83.6389
18773818773312
36.3636
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
81.7466
69.7674
98.6920
34.2284
2460106624903324
72.7273
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
96.7448
94.4798
99.1212
50.4094
37142173722333
9.0909
ckim-isaacSNPtimap_l125_m1_e0het
78.2097
64.3326
99.7200
73.5328
11751651511751333
9.0909
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
76.2347
73.3333
79.3750
87.3317
121441273310
30.3030
ckim-isaacSNPtvmap_l100_m2_e0het
79.2946
65.8300
99.6834
69.5147
10386539110389338
24.2424
ckim-vqsrINDEL*map_l150_m0_e0*
95.5110
97.2763
93.8086
94.9219
50014500332
6.0606
egarrison-hhgaSNPtvsegduphet
99.4044
99.4326
99.3762
90.4305
5257305257332
6.0606
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.8165
94.2782
99.4953
23.7106
649239465053333
100.0000
ckim-vqsrINDELD1_5map_l125_m1_e0het
95.7449
96.0055
95.4856
91.8049
69729698333
9.0909
ckim-vqsrINDELD1_5map_l125_m2_e0het
95.6835
95.6806
95.6863
92.2445
73133732333
9.0909
ckim-vqsrINDELD1_5map_l125_m2_e1het
95.6493
95.5844
95.7143
92.3154
73634737333
9.0909