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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1371 1372 1373 1374 1375 1376 1377 1378 1379 ... 1720 1721 » 68701-68750 / 86044 show all
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3205	99.5404	97.1300	67.2155	1083	5	1083	32	26	81.2500
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	96.8262	99.5074	94.2857	83.6449	606	3	528	32	23	71.8750
bgallagher-sentieon	INDEL	D6_15	HG002compoundhet	hetalt	96.6337	93.8535	99.5837	23.7576	7650	501	7654	32	32	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4789	99.8586	99.1021	72.7252	3532	5	3532	32	32	100.0000
ciseli-custom	INDEL	D1_5	map_l250_m2_e1	het	63.2360	58.1967	69.2308	97.7322	71	51	72	32	6	18.7500
ciseli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	26.5487	83.3333	15.7895	99.1732	5	1	6	32	12	37.5000
ckim-dragen	INDEL	D1_5	HG002complexvar	het	99.7370	99.6292	99.8451	55.8027	20688	77	20632	32	11	34.3750
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8383	99.8028	99.8737	55.5058	25309	50	25307	32	17	53.1250
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.3919	95.3611	99.5111	32.7822	6496	316	6513	32	32	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	96.1405	97.7087	94.6218	72.0263	597	14	563	32	32	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	99.1036	99.3780	98.8308	63.1331	2716	17	2705	32	28	87.5000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.5871	95.8024	99.4396	50.7631	5683	249	5678	32	30	93.7500
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	92.7152	99.5261	86.7769	70.8785	210	1	210	32	32	100.0000
ckim-dragen	SNP	*	map_l125_m1_e0	homalt	99.5672	99.3256	99.8098	61.0436	16791	114	16796	32	29	90.6250
ckim-dragen	SNP	*	map_l125_m2_e0	homalt	99.5644	99.3151	99.8150	63.8939	17256	119	17261	32	29	90.6250
ckim-dragen	SNP	*	map_l125_m2_e1	homalt	99.5683	99.3212	99.8166	63.9224	17413	119	17418	32	29	90.6250
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	97.0978	97.8306	96.3760	82.9898	947	21	851	32	22	68.7500
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	96.8208	99.5074	94.2755	84.0377	606	3	527	32	22	68.7500
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6249	99.5200	99.7301	51.4696	11818	57	11823	32	15	46.8750
ckim-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.7140	95.9777	99.5142	33.0521	6538	274	6555	32	32	100.0000
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.5290	95.6844	99.4462	41.4708	5676	256	5746	32	30	93.7500
cchapple-custom	INDEL	I1_5	map_l100_m1_e0	*	97.2897	97.0127	97.5684	82.3852	1299	40	1284	32	10	31.2500
cchapple-custom	INDEL	I1_5	map_l100_m2_e0	*	97.3100	97.0029	97.6190	83.7387	1327	41	1312	32	10	31.2500
cchapple-custom	INDEL	I1_5	map_l100_m2_e1	*	97.3625	97.0609	97.6659	83.8268	1354	41	1339	32	10	31.2500
ciseli-custom	INDEL	C16_PLUS	HG002complexvar	*	0.0000	0.0000	23.8095	92.5926	0	0	10	32	15	46.8750
cchapple-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	93.7077	92.3701	95.0845	58.6667	569	47	619	32	28	87.5000
ckim-gatk	SNP	tv	*	homalt	99.5305	99.0738	99.9914	20.3623	373630	3493	373616	32	19	59.3750
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2353	99.2360	97.2546	73.3953	1169	9	1169	33	33	100.0000
ckim-gatk	INDEL	I1_5	map_l100_m1_e0	het	97.0881	98.3269	95.8801	89.2469	764	13	768	33	1	3.0303
ckim-gatk	INDEL	I1_5	map_l100_m2_e0	het	97.1459	98.3607	95.9608	90.0195	780	13	784	33	1	3.0303
ckim-gatk	INDEL	I1_5	map_l100_m2_e1	het	97.2049	98.3951	96.0432	90.0501	797	13	801	33	1	3.0303
ckim-gatk	INDEL	I1_5	segdup	*	98.0421	99.1501	96.9585	95.6110	1050	9	1052	33	2	6.0606
ckim-isaac	INDEL	*	segdup	het	97.0051	96.3165	97.7035	93.8034	1412	54	1404	33	20	60.6061
ckim-gatk	INDEL	D1_5	HG002complexvar	het	99.7759	99.7111	99.8409	56.3066	20705	60	20710	33	15	45.4545
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8242	94.2928	99.4953	23.7079	6493	393	6506	33	33	100.0000
ckim-gatk	INDEL	D6_15	HG002compoundhet	hetalt	96.9335	94.4301	99.5733	24.1244	7697	454	7701	33	33	100.0000
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	88.6698	84.9899	92.6829	52.2246	419	74	418	33	30	90.9091
ciseli-custom	INDEL	D16_PLUS	map_siren	*	56.9106	48.9510	67.9612	87.2050	70	73	70	33	21	63.6364
ciseli-custom	INDEL	I1_5	map_l250_m1_e0	het	53.5433	56.6667	50.7463	97.1158	34	26	34	33	26	78.7879
ciseli-custom	INDEL	I1_5	map_l250_m2_e0	het	54.4118	56.0606	52.8571	97.3242	37	29	37	33	26	78.7879
ciseli-custom	INDEL	I1_5	map_l250_m2_e1	het	54.4118	56.0606	52.8571	97.3987	37	29	37	33	26	78.7879
ciseli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	49.1803	50.8475	47.6190	48.7805	30	29	30	33	26	78.7879
ckim-dragen	INDEL	D1_5	HG002complexvar	homalt	99.7544	99.8207	99.6881	60.4958	10579	19	10549	33	30	90.9091
ckim-dragen	INDEL	I1_5	map_l100_m1_e0	*	97.1890	96.8633	97.5169	84.0762	1297	42	1296	33	8	24.2424
ckim-dragen	INDEL	I1_5	map_l100_m2_e0	*	97.2488	96.9298	97.5700	85.3664	1326	42	1325	33	8	24.2424
ckim-dragen	INDEL	I1_5	map_l100_m2_e1	*	97.3023	96.9892	97.6173	85.4425	1353	42	1352	33	8	24.2424
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.8012	99.6785	90.3790	71.4642	310	1	310	33	33	100.0000
ckim-dragen	SNP	*	HG002compoundhet	het	99.7322	99.6967	99.7677	46.4046	14135	43	14173	33	8	24.2424
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3107	99.0992	99.5231	80.1218	6821	62	6887	33	15	45.4545
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.7675	99.8416	99.6935	39.2563	10715	17	10732	33	4	12.1212

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