PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67801-67850 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.7963 | 98.1618 | 97.4335 | 57.5156 | 1068 | 20 | 1063 | 28 | 24 | 85.7143 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1585 | 96.0784 | 98.2630 | 83.6495 | 1470 | 60 | 1584 | 28 | 20 | 71.4286 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1585 | 96.0784 | 98.2630 | 83.6495 | 1470 | 60 | 1584 | 28 | 20 | 71.4286 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 34.7933 | 24.1573 | 62.1622 | 74.0351 | 43 | 135 | 46 | 28 | 27 | 96.4286 | |
| ckim-dragen | SNP | tv | map_l250_m0_e0 | het | 95.0131 | 94.9301 | 95.0963 | 94.2428 | 543 | 29 | 543 | 28 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8174 | 99.8052 | 99.8295 | 60.0496 | 16397 | 32 | 16396 | 28 | 4 | 14.2857 | |
| ckim-gatk | INDEL | D16_PLUS | * | homalt | 99.0314 | 99.7045 | 98.3673 | 70.9863 | 1687 | 5 | 1687 | 28 | 22 | 78.5714 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6910 | 99.5997 | 97.7987 | 75.1563 | 1244 | 5 | 1244 | 28 | 22 | 78.5714 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.7712 | 99.6205 | 94.0803 | 83.0466 | 525 | 2 | 445 | 28 | 26 | 92.8571 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6910 | 99.5997 | 97.7987 | 75.1563 | 1244 | 5 | 1244 | 28 | 22 | 78.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 91.5531 | 98.2456 | 85.7143 | 96.6701 | 168 | 3 | 168 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 88.8000 | 100.0000 | 79.8561 | 97.0394 | 111 | 0 | 111 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 92.1120 | 98.3696 | 86.6029 | 96.8600 | 181 | 3 | 181 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 89.6296 | 100.0000 | 81.2081 | 97.1866 | 121 | 0 | 121 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 92.1519 | 98.3784 | 86.6667 | 96.9213 | 182 | 3 | 182 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 89.7059 | 100.0000 | 81.3333 | 97.2355 | 122 | 0 | 122 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | het | 99.0142 | 98.9423 | 99.0862 | 59.4709 | 3087 | 33 | 3036 | 28 | 22 | 78.5714 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8094 | 96.1793 | 99.4957 | 50.2286 | 5513 | 219 | 5524 | 28 | 25 | 89.2857 | |
| cchapple-custom | SNP | ti | func_cds | * | 99.8586 | 99.9202 | 99.7971 | 24.6780 | 13776 | 11 | 13774 | 28 | 1 | 3.5714 | |
| cchapple-custom | SNP | ti | func_cds | het | 99.7946 | 99.9177 | 99.6718 | 27.6397 | 8497 | 7 | 8504 | 28 | 1 | 3.5714 | |
| ciseli-custom | INDEL | * | map_l250_m0_e0 | * | 55.0520 | 51.2821 | 59.4203 | 98.6428 | 40 | 38 | 41 | 28 | 8 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | * | 82.6291 | 90.7216 | 75.8621 | 95.5021 | 88 | 9 | 88 | 28 | 5 | 17.8571 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | * | 87.4390 | 93.0070 | 82.5000 | 95.1981 | 133 | 10 | 132 | 28 | 3 | 10.7143 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.2901 | 93.2087 | 99.5822 | 26.9805 | 6629 | 483 | 6673 | 28 | 28 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.2933 | 93.2116 | 99.5857 | 27.6338 | 6687 | 487 | 6731 | 28 | 28 | 100.0000 | |
| ckim-dragen | SNP | * | map_l150_m1_e0 | homalt | 99.4842 | 99.2194 | 99.7504 | 65.7675 | 11185 | 88 | 11190 | 28 | 25 | 89.2857 | |
| ckim-dragen | SNP | * | map_l150_m2_e0 | homalt | 99.4944 | 99.2307 | 99.7595 | 68.4345 | 11609 | 90 | 11614 | 28 | 25 | 89.2857 | |
| ckim-dragen | SNP | * | map_l150_m2_e1 | homalt | 99.4914 | 99.2221 | 99.7621 | 68.4589 | 11735 | 92 | 11740 | 28 | 25 | 89.2857 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 76.0875 | 71.7742 | 80.9524 | 99.8808 | 89 | 35 | 119 | 28 | 20 | 71.4286 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.4440 | 85.0575 | 78.1250 | 99.8790 | 74 | 13 | 100 | 28 | 20 | 71.4286 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 52.5424 | 95.8421 | 0 | 0 | 31 | 28 | 4 | 14.2857 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 45.0980 | 95.9363 | 0 | 0 | 23 | 28 | 4 | 14.2857 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 96.7213 | 0 | 0 | 28 | 28 | 11 | 39.2857 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 19.5122 | 17.3913 | 22.2222 | 55.5556 | 8 | 38 | 8 | 28 | 27 | 96.4286 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 51.4286 | 64.2857 | 42.8571 | 93.8442 | 27 | 15 | 21 | 28 | 1 | 3.5714 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.0761 | 81.4952 | 98.2120 | 71.9556 | 1537 | 349 | 1538 | 28 | 27 | 96.4286 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | het | 97.4816 | 97.2705 | 97.6936 | 82.4440 | 1176 | 33 | 1186 | 28 | 2 | 7.1429 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | het | 97.5348 | 97.2930 | 97.7778 | 83.2980 | 1222 | 34 | 1232 | 28 | 2 | 7.1429 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.8733 | 81.0734 | 91.2773 | 61.1380 | 287 | 67 | 293 | 28 | 27 | 96.4286 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 38.1941 | 23.9567 | 94.1423 | 64.6972 | 310 | 984 | 450 | 28 | 28 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 26.6884 | 15.5852 | 92.8021 | 65.3298 | 257 | 1392 | 361 | 28 | 27 | 96.4286 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.5084 | 97.1778 | 97.8412 | 76.7438 | 1033 | 30 | 1269 | 28 | 22 | 78.5714 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | * | 97.6374 | 97.4329 | 97.8428 | 85.0133 | 835 | 22 | 1270 | 28 | 19 | 67.8571 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | * | 93.1788 | 95.1613 | 91.2773 | 90.7573 | 295 | 15 | 293 | 28 | 6 | 21.4286 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m1_e0 | het | 78.3217 | 94.9153 | 66.6667 | 88.3978 | 56 | 3 | 56 | 28 | 19 | 67.8571 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e0 | het | 78.9116 | 95.0820 | 67.4419 | 89.1960 | 58 | 3 | 58 | 28 | 19 | 67.8571 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e1 | het | 78.9116 | 95.0820 | 67.4419 | 89.4349 | 58 | 3 | 58 | 28 | 19 | 67.8571 | |
| gduggal-bwafb | SNP | ti | map_l250_m0_e0 | * | 97.5073 | 97.0803 | 97.9381 | 93.5330 | 1330 | 40 | 1330 | 28 | 9 | 32.1429 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5239 | 99.8551 | 99.1949 | 41.9366 | 3445 | 5 | 3450 | 28 | 3 | 10.7143 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2813 | 99.8597 | 98.7097 | 43.7241 | 2135 | 3 | 2142 | 28 | 3 | 10.7143 | |