PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67651-67700 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.2682 | 92.0384 | 98.7330 | 37.3051 | 1630 | 141 | 2104 | 27 | 26 | 96.2963 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.0423 | 98.7194 | 99.3672 | 50.0468 | 4240 | 55 | 4240 | 27 | 2 | 7.4074 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 6.8966 | 100.0000 | 3.5714 | 80.5556 | 1 | 0 | 1 | 27 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_l125_m1_e0 | * | 46.3852 | 30.2138 | 99.8032 | 91.3119 | 13695 | 31632 | 13692 | 27 | 6 | 22.2222 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.0782 | 98.7966 | 99.3614 | 79.3181 | 4187 | 51 | 4201 | 27 | 8 | 29.6296 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.6448 | 88.6228 | 97.0492 | 64.9425 | 888 | 114 | 888 | 27 | 24 | 88.8889 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6756 | 99.9350 | 99.4176 | 34.7502 | 4613 | 3 | 4609 | 27 | 2 | 7.4074 | |
| bgallagher-sentieon | SNP | tv | map_l250_m0_e0 | het | 96.6350 | 97.9021 | 95.4003 | 93.3341 | 560 | 12 | 560 | 27 | 2 | 7.4074 | |
| bgallagher-sentieon | INDEL | D6_15 | HG002complexvar | het | 98.9817 | 98.8462 | 99.1176 | 59.3518 | 3084 | 36 | 3033 | 27 | 21 | 77.7778 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3872 | 99.0063 | 99.7710 | 48.5556 | 11757 | 118 | 11762 | 27 | 17 | 62.9630 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002complexvar | homalt | 99.8477 | 99.8959 | 99.7995 | 52.5914 | 13434 | 14 | 13438 | 27 | 27 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | * | homalt | 99.9865 | 99.9801 | 99.9928 | 19.7814 | 377048 | 75 | 377042 | 27 | 21 | 77.7778 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.7288 | 90.2597 | 95.3368 | 64.7810 | 556 | 60 | 552 | 27 | 25 | 92.5926 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8033 | 98.0989 | 99.5179 | 50.4556 | 5573 | 108 | 5573 | 27 | 24 | 88.8889 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.7503 | 87.5000 | 90.0369 | 78.1275 | 252 | 36 | 244 | 27 | 25 | 92.5926 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7162 | 99.7111 | 99.7214 | 67.6049 | 9664 | 28 | 9664 | 27 | 20 | 74.0741 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e0 | homalt | 99.5456 | 99.3309 | 99.7613 | 68.8663 | 11282 | 76 | 11282 | 27 | 26 | 96.2963 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e1 | homalt | 99.5496 | 99.3367 | 99.7633 | 68.9111 | 11382 | 76 | 11382 | 27 | 26 | 96.2963 | |
| rpoplin-dv42 | SNP | tv | segdup | * | 99.6835 | 99.6835 | 99.6834 | 91.0590 | 8505 | 27 | 8501 | 27 | 12 | 44.4444 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.4203 | 98.9214 | 95.9641 | 68.3987 | 642 | 7 | 642 | 27 | 27 | 100.0000 | |
| dgrover-gatk | SNP | ti | HG002compoundhet | * | 99.8369 | 99.8284 | 99.8455 | 35.6925 | 17448 | 30 | 17446 | 27 | 21 | 77.7778 | |
| ckim-isaac | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.1734 | 94.6284 | 99.8591 | 48.1340 | 19114 | 1085 | 19138 | 27 | 18 | 66.6667 | |
| ckim-isaac | SNP | * | map_l125_m0_e0 | * | 70.7547 | 54.8207 | 99.7466 | 75.5092 | 10627 | 8758 | 10627 | 27 | 5 | 18.5185 | |
| ckim-isaac | SNP | ti | map_l150_m2_e1 | het | 75.7313 | 61.0680 | 99.6614 | 80.0450 | 7948 | 5067 | 7948 | 27 | 3 | 11.1111 | |
| ckim-isaac | SNP | tv | map_l125_m1_e0 | het | 74.2974 | 59.2633 | 99.5522 | 74.3164 | 6001 | 4125 | 6003 | 27 | 7 | 25.9259 | |
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | * | 93.0757 | 94.7541 | 91.4557 | 97.2688 | 289 | 16 | 289 | 27 | 2 | 7.4074 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | * | 93.4524 | 94.8640 | 92.0821 | 97.4260 | 314 | 17 | 314 | 27 | 2 | 7.4074 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e1 | * | 93.4911 | 94.8949 | 92.1283 | 97.4798 | 316 | 17 | 316 | 27 | 2 | 7.4074 | |
| dgrover-gatk | INDEL | * | segdup | * | 99.0625 | 99.1784 | 98.9470 | 94.7737 | 2535 | 21 | 2537 | 27 | 10 | 37.0370 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6877 | 99.7767 | 99.5988 | 53.6597 | 6701 | 15 | 6703 | 27 | 8 | 29.6296 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m1_e0 | het | 98.0207 | 98.2630 | 97.7796 | 82.5011 | 1188 | 21 | 1189 | 27 | 7 | 25.9259 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | het | 98.0946 | 98.3280 | 97.8622 | 83.1891 | 1235 | 21 | 1236 | 27 | 7 | 25.9259 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.8238 | 91.8033 | 80.5755 | 80.1994 | 112 | 10 | 112 | 27 | 16 | 59.2593 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 85.5570 | 79.7101 | 92.3295 | 70.6177 | 330 | 84 | 325 | 27 | 17 | 62.9630 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6158 | 95.9792 | 99.3093 | 24.9856 | 3867 | 162 | 3882 | 27 | 26 | 96.2963 | |
| egarrison-hhga | SNP | * | map_l250_m1_e0 | het | 98.2228 | 97.0557 | 99.4184 | 88.3044 | 4615 | 140 | 4615 | 27 | 10 | 37.0370 | |
| egarrison-hhga | SNP | * | map_siren | homalt | 99.8639 | 99.7770 | 99.9510 | 53.4112 | 55033 | 123 | 55033 | 27 | 24 | 88.8889 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | * | 99.2922 | 98.8287 | 99.7600 | 74.2574 | 11222 | 133 | 11222 | 27 | 12 | 44.4444 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | * | 99.3012 | 98.8437 | 99.7631 | 74.2719 | 11369 | 133 | 11369 | 27 | 12 | 44.4444 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 88.1005 | 80.0000 | 98.0263 | 81.2243 | 428 | 107 | 1341 | 27 | 27 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 72.1649 | 94.3008 | 0 | 0 | 70 | 27 | 25 | 92.5926 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.4580 | 95.5784 | 99.4130 | 24.4663 | 4561 | 211 | 4573 | 27 | 27 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.5454 | 94.9673 | 98.1769 | 85.0222 | 1453 | 77 | 1454 | 27 | 18 | 66.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.5454 | 94.9673 | 98.1769 | 85.0222 | 1453 | 77 | 1454 | 27 | 18 | 66.6667 | |
| ckim-vqsr | SNP | ti | func_cds | * | 99.7642 | 99.7244 | 99.8040 | 29.1716 | 13749 | 38 | 13747 | 27 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | func_cds | het | 99.7473 | 99.8119 | 99.6828 | 33.7510 | 8488 | 16 | 8486 | 27 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6910 | 99.5997 | 97.7987 | 75.1563 | 1244 | 5 | 1244 | 28 | 22 | 78.5714 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.7712 | 99.6205 | 94.0803 | 83.0466 | 525 | 2 | 445 | 28 | 26 | 92.8571 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6910 | 99.5997 | 97.7987 | 75.1563 | 1244 | 5 | 1244 | 28 | 22 | 78.5714 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m0_e0 | het | 96.0537 | 96.7851 | 95.3333 | 90.9829 | 572 | 19 | 572 | 28 | 2 | 7.1429 | |