PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67601-67650 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | * | map_l125_m1_e0 | het | 97.3655 | 96.7790 | 97.9592 | 85.1598 | 1292 | 43 | 1296 | 27 | 3 | 11.1111 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | het | 97.3979 | 96.7649 | 98.0392 | 86.1441 | 1346 | 45 | 1350 | 27 | 3 | 11.1111 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e1 | het | 97.4295 | 96.8040 | 98.0631 | 86.2674 | 1363 | 45 | 1367 | 27 | 3 | 11.1111 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.5217 | 100.0000 | 61.9718 | 67.8733 | 45 | 0 | 44 | 27 | 2 | 7.4074 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m0_e0 | het | 86.9445 | 80.0338 | 95.1613 | 92.6675 | 473 | 118 | 531 | 27 | 20 | 74.0741 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 86.5537 | 78.7879 | 96.0177 | 92.5772 | 572 | 154 | 651 | 27 | 21 | 77.7778 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e0 | het | 86.7233 | 78.9267 | 96.2291 | 92.7251 | 603 | 161 | 689 | 27 | 21 | 77.7778 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 86.8330 | 79.0909 | 96.2552 | 92.7907 | 609 | 161 | 694 | 27 | 21 | 77.7778 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m1_e0 | * | 84.3978 | 75.4533 | 95.7480 | 93.2533 | 541 | 176 | 608 | 27 | 23 | 85.1852 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 85.0239 | 76.2779 | 96.0352 | 93.3503 | 582 | 181 | 654 | 27 | 23 | 85.1852 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e1 | * | 85.2592 | 76.6067 | 96.1151 | 93.3295 | 596 | 182 | 668 | 27 | 23 | 85.1852 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 89.1712 | 90.4306 | 87.9464 | 73.4911 | 189 | 20 | 197 | 27 | 10 | 37.0370 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 80.0602 | 87.5000 | 73.7864 | 75.5344 | 56 | 8 | 76 | 27 | 2 | 7.4074 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.3912 | 83.6820 | 93.6620 | 67.7273 | 400 | 78 | 399 | 27 | 22 | 81.4815 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0203 | 98.2985 | 99.7527 | 60.4577 | 10919 | 189 | 10893 | 27 | 9 | 33.3333 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4941 | 94.2149 | 96.8085 | 80.8641 | 912 | 56 | 819 | 27 | 18 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | map_l100_m0_e0 | * | 97.6521 | 97.0569 | 98.2547 | 83.9206 | 1517 | 46 | 1520 | 27 | 6 | 22.2222 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | het | 97.8105 | 96.8680 | 98.7716 | 82.6711 | 2165 | 70 | 2171 | 27 | 4 | 14.8148 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 90.9276 | 91.7603 | 90.1099 | 64.2202 | 245 | 22 | 246 | 27 | 5 | 18.5185 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m1_e0 | het | 95.1089 | 95.6790 | 94.5455 | 85.1619 | 465 | 21 | 468 | 27 | 3 | 11.1111 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e0 | het | 95.2161 | 95.7746 | 94.6640 | 86.7331 | 476 | 21 | 479 | 27 | 3 | 11.1111 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e1 | het | 95.3187 | 95.8661 | 94.7776 | 86.8347 | 487 | 21 | 490 | 27 | 3 | 11.1111 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | * | 95.4029 | 95.8569 | 94.9533 | 91.2223 | 509 | 22 | 508 | 27 | 7 | 25.9259 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 40.9756 | 28.1879 | 75.0000 | 50.6849 | 42 | 107 | 81 | 27 | 27 | 100.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m0_e0 | homalt | 97.3012 | 95.0733 | 99.6360 | 73.4569 | 7391 | 383 | 7391 | 27 | 15 | 55.5556 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 43.7439 | 31.3305 | 72.4490 | 90.3733 | 73 | 160 | 71 | 27 | 10 | 37.0370 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | het | 80.9783 | 77.6042 | 84.6591 | 95.8412 | 149 | 43 | 149 | 27 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.7435 | 93.5247 | 98.0701 | 82.9494 | 1401 | 97 | 1372 | 27 | 13 | 48.1481 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 37.2093 | 71.1409 | 0 | 0 | 16 | 27 | 5 | 18.5185 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 66.4196 | 55.6522 | 82.3529 | 58.1967 | 128 | 102 | 126 | 27 | 19 | 70.3704 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 22.7920 | 22.7273 | 22.8571 | 61.5385 | 5 | 17 | 8 | 27 | 15 | 55.5556 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 34.1463 | 100.0000 | 20.5882 | 69.9115 | 1 | 0 | 7 | 27 | 22 | 81.4815 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 60.8696 | 77.7778 | 50.0000 | 52.2124 | 28 | 8 | 27 | 27 | 21 | 77.7778 | |
| anovak-vg | INDEL | I6_15 | segdup | het | 38.0775 | 28.9157 | 55.7377 | 91.0688 | 24 | 59 | 34 | 27 | 13 | 48.1481 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.9774 | 97.8472 | 98.1079 | 69.1926 | 1409 | 31 | 1400 | 27 | 11 | 40.7407 | |
| anovak-vg | SNP | tv | map_l150_m1_e0 | homalt | 87.3069 | 78.0030 | 99.1307 | 71.3389 | 3078 | 868 | 3079 | 27 | 20 | 74.0741 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8087 | 99.7134 | 99.9043 | 58.1701 | 28179 | 81 | 28181 | 27 | 15 | 55.5556 | |
| astatham-gatk | SNP | ti | map_l250_m1_e0 | het | 89.5242 | 81.7722 | 98.8998 | 92.0567 | 2427 | 541 | 2427 | 27 | 9 | 33.3333 | |
| astatham-gatk | SNP | ti | map_l250_m2_e0 | het | 89.3237 | 81.3768 | 98.9907 | 92.3822 | 2648 | 606 | 2648 | 27 | 9 | 33.3333 | |
| astatham-gatk | SNP | ti | map_l250_m2_e1 | het | 89.3914 | 81.4792 | 99.0055 | 92.4310 | 2688 | 611 | 2688 | 27 | 9 | 33.3333 | |
| astatham-gatk | SNP | tv | map_l125_m0_e0 | het | 90.1921 | 82.6403 | 99.2629 | 82.5538 | 3637 | 764 | 3636 | 27 | 5 | 18.5185 | |
| asubramanian-gatk | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 84.2105 | 0 | 0 | 0 | 27 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 83.8323 | 0 | 0 | 0 | 27 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 83.8323 | 0 | 0 | 0 | 27 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.5262 | 96.9639 | 94.1304 | 83.3091 | 511 | 16 | 433 | 27 | 27 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | HG002complexvar | homalt | 99.6538 | 99.5092 | 99.7987 | 52.7938 | 13382 | 66 | 13389 | 27 | 26 | 96.2963 | |
| asubramanian-gatk | INDEL | I1_5 | map_siren | het | 89.9163 | 82.9863 | 98.1092 | 85.7556 | 1395 | 286 | 1401 | 27 | 5 | 18.5185 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.3602 | 96.1713 | 98.5789 | 73.8003 | 1482 | 59 | 1873 | 27 | 17 | 62.9630 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.2631 | 87.6866 | 95.1439 | 62.7595 | 470 | 66 | 529 | 27 | 23 | 85.1852 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.2350 | 95.0135 | 97.4884 | 66.2374 | 705 | 37 | 1048 | 27 | 19 | 70.3704 | |