PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67501-67550 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 79.6774 | 71.3873 | 90.1460 | 83.5435 | 247 | 99 | 247 | 27 | 5 | 18.5185 | |
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | * | 67.9659 | 51.5984 | 99.5413 | 91.9142 | 5859 | 5496 | 5859 | 27 | 5 | 18.5185 | |
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | het | 72.7336 | 57.3635 | 99.3551 | 93.0443 | 4160 | 3092 | 4160 | 27 | 5 | 18.5185 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.1182 | 98.6758 | 99.5645 | 45.6045 | 6185 | 83 | 6173 | 27 | 13 | 48.1481 | |
| gduggal-snapfb | INDEL | * | segdup | homalt | 95.2260 | 93.4375 | 97.0842 | 94.2949 | 897 | 63 | 899 | 27 | 15 | 55.5556 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 41.3043 | 96.3434 | 0 | 0 | 19 | 27 | 3 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 32.5000 | 96.4093 | 0 | 0 | 13 | 27 | 3 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 42.5532 | 96.3509 | 0 | 0 | 20 | 27 | 3 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 34.1463 | 96.4004 | 0 | 0 | 14 | 27 | 3 | 11.1111 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 20.5128 | 50.0000 | 12.9032 | 57.5342 | 4 | 4 | 4 | 27 | 26 | 96.2963 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m0_e0 | * | 73.5260 | 73.7864 | 73.2673 | 91.6529 | 76 | 27 | 74 | 27 | 20 | 74.0741 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m0_e0 | het | 81.3793 | 100.0000 | 68.6047 | 92.0591 | 60 | 0 | 59 | 27 | 20 | 74.0741 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 24.8564 | 19.5402 | 34.1463 | 81.7778 | 17 | 70 | 14 | 27 | 16 | 59.2593 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 44.2791 | 62.9630 | 34.1463 | 81.0185 | 17 | 10 | 14 | 27 | 16 | 59.2593 | |
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.7437 | 95.5319 | 97.9866 | 71.7029 | 1347 | 63 | 1314 | 27 | 20 | 74.0741 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.9277 | 95.7746 | 71.5789 | 51.0309 | 68 | 3 | 68 | 27 | 27 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.8525 | 100.0000 | 92.0354 | 67.8977 | 311 | 0 | 312 | 27 | 27 | 100.0000 | |
| jli-custom | SNP | * | func_cds | * | 99.9036 | 99.9559 | 99.8514 | 23.3699 | 18142 | 8 | 18142 | 27 | 0 | 0.0000 | |
| jli-custom | SNP | * | func_cds | het | 99.8568 | 99.9552 | 99.7586 | 24.6835 | 11156 | 5 | 11156 | 27 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7850 | 99.0930 | 98.4789 | 88.6741 | 1748 | 16 | 1748 | 27 | 12 | 44.4444 | |
| jli-custom | SNP | tv | HG002compoundhet | het | 99.4759 | 99.5292 | 99.4226 | 55.0428 | 4651 | 22 | 4649 | 27 | 10 | 37.0370 | |
| jli-custom | SNP | tv | map_l250_m2_e0 | * | 98.1086 | 97.1895 | 99.0453 | 86.0929 | 2801 | 81 | 2801 | 27 | 12 | 44.4444 | |
| jli-custom | SNP | tv | map_l250_m2_e1 | * | 98.1308 | 97.2222 | 99.0566 | 86.1913 | 2835 | 81 | 2835 | 27 | 12 | 44.4444 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.4762 | 60.4839 | 73.7864 | 99.9217 | 75 | 49 | 76 | 27 | 19 | 70.3704 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | het | 93.0233 | 93.8416 | 92.2190 | 93.9442 | 320 | 21 | 320 | 27 | 18 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 69.3125 | 68.9655 | 69.6629 | 88.8471 | 60 | 27 | 62 | 27 | 20 | 74.0741 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 76.2389 | 92.3077 | 64.9351 | 86.6087 | 48 | 4 | 50 | 27 | 20 | 74.0741 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.1044 | 93.8977 | 98.4174 | 74.4802 | 1708 | 111 | 1679 | 27 | 14 | 51.8519 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.1044 | 93.8977 | 98.4174 | 74.4802 | 1708 | 111 | 1679 | 27 | 14 | 51.8519 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.2807 | 95.0784 | 99.5875 | 32.3304 | 6491 | 336 | 6518 | 27 | 27 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | * | 98.4561 | 97.7047 | 99.2192 | 76.7013 | 3448 | 81 | 3431 | 27 | 5 | 18.5185 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 54.4398 | 38.5882 | 92.3944 | 62.6316 | 328 | 522 | 328 | 27 | 21 | 77.7778 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4208 | 98.5443 | 98.2976 | 60.8492 | 1557 | 23 | 1559 | 27 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6259 | 94.6129 | 98.7264 | 59.9168 | 2090 | 119 | 2093 | 27 | 24 | 88.8889 | |
| ltrigg-rtg1 | SNP | * | map_l100_m1_e0 | homalt | 99.8221 | 99.7445 | 99.8999 | 60.0030 | 26934 | 69 | 26933 | 27 | 24 | 88.8889 | |
| ltrigg-rtg1 | SNP | ti | map_siren | homalt | 99.8522 | 99.7758 | 99.9287 | 51.0640 | 37831 | 85 | 37826 | 27 | 26 | 96.2963 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | het | 98.3382 | 97.0922 | 99.6165 | 55.2134 | 7012 | 210 | 7013 | 27 | 4 | 14.8148 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | * | 98.9030 | 98.0625 | 99.7581 | 68.2059 | 11135 | 220 | 11134 | 27 | 6 | 22.2222 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | * | 98.9128 | 98.0786 | 99.7613 | 68.2500 | 11281 | 221 | 11283 | 27 | 6 | 22.2222 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.8671 | 89.7394 | 98.3929 | 66.3731 | 1653 | 189 | 1653 | 27 | 15 | 55.5556 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002compoundhet | het | 81.1158 | 79.8077 | 82.4675 | 86.8038 | 166 | 42 | 127 | 27 | 25 | 92.5926 | |
| hfeng-pmm3 | SNP | * | map_l100_m0_e0 | homalt | 99.7288 | 99.6902 | 99.7675 | 63.7304 | 11584 | 36 | 11584 | 27 | 10 | 37.0370 | |
| hfeng-pmm3 | SNP | * | map_l150_m1_e0 | homalt | 99.7427 | 99.7250 | 99.7604 | 71.2100 | 11242 | 31 | 11242 | 27 | 10 | 37.0370 | |
| hfeng-pmm3 | SNP | * | map_l150_m2_e0 | homalt | 99.7521 | 99.7350 | 99.7691 | 73.4090 | 11668 | 31 | 11668 | 27 | 10 | 37.0370 | |
| hfeng-pmm3 | SNP | * | map_l150_m2_e1 | homalt | 99.7548 | 99.7379 | 99.7716 | 73.4338 | 11796 | 31 | 11796 | 27 | 10 | 37.0370 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.8847 | 89.4650 | 98.7637 | 56.1710 | 2157 | 254 | 2157 | 27 | 25 | 92.5926 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3151 | 99.0809 | 97.5610 | 86.3283 | 1078 | 10 | 1080 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.3954 | 99.1251 | 97.6764 | 86.9350 | 1133 | 10 | 1135 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.4147 | 99.1357 | 97.7041 | 87.0012 | 1147 | 10 | 1149 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | SNP | * | map_l125_m0_e0 | homalt | 99.6276 | 99.6573 | 99.5980 | 70.8911 | 6689 | 23 | 6689 | 27 | 10 | 37.0370 | |