PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67401-67450 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.4071 | 93.1373 | 78.8618 | 92.1305 | 95 | 7 | 97 | 26 | 3 | 11.5385 | |
| asubramanian-gatk | SNP | * | map_l125_m1_e0 | het | 49.6482 | 33.0516 | 99.7236 | 92.3828 | 9384 | 19008 | 9381 | 26 | 6 | 23.0769 | |
| asubramanian-gatk | SNP | ti | map_l100_m1_e0 | * | 61.7256 | 44.6642 | 99.8787 | 83.4799 | 21408 | 26523 | 21404 | 26 | 10 | 38.4615 | |
| asubramanian-gatk | SNP | ti | map_l100_m1_e0 | het | 64.3552 | 47.4851 | 99.8174 | 85.5215 | 14218 | 15724 | 14214 | 26 | 10 | 38.4615 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.9824 | 97.9405 | 98.0243 | 36.9430 | 1284 | 27 | 1290 | 26 | 13 | 50.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7617 | 99.9506 | 99.5734 | 57.9016 | 6069 | 3 | 6069 | 26 | 25 | 96.1538 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3282 | 96.4052 | 98.2690 | 85.0309 | 1475 | 55 | 1476 | 26 | 18 | 69.2308 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3282 | 96.4052 | 98.2690 | 85.0309 | 1475 | 55 | 1476 | 26 | 18 | 69.2308 | |
| astatham-gatk | INDEL | I1_5 | HG002complexvar | homalt | 99.8625 | 99.9182 | 99.8069 | 52.9404 | 13437 | 11 | 13442 | 26 | 26 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4715 | 90.0200 | 97.1983 | 64.9943 | 902 | 100 | 902 | 26 | 23 | 88.4615 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.0480 | 100.0000 | 96.1708 | 73.1621 | 653 | 0 | 653 | 26 | 25 | 96.1538 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5214 | 99.5507 | 99.4922 | 74.9449 | 5096 | 23 | 5094 | 26 | 13 | 50.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9940 | 99.1803 | 94.9020 | 71.6981 | 484 | 4 | 484 | 26 | 22 | 84.6154 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6951 | 99.7767 | 99.6136 | 53.1211 | 6701 | 15 | 6703 | 26 | 9 | 34.6154 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m1_e0 | het | 98.5653 | 99.2556 | 97.8845 | 84.2173 | 1200 | 9 | 1203 | 26 | 4 | 15.3846 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | het | 98.5784 | 99.2038 | 97.9608 | 84.7707 | 1246 | 10 | 1249 | 26 | 4 | 15.3846 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | het | 98.5917 | 99.2114 | 97.9798 | 84.8890 | 1258 | 10 | 1261 | 26 | 4 | 15.3846 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1938 | 95.0545 | 99.4316 | 25.2614 | 4536 | 236 | 4548 | 26 | 26 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5944 | 99.5794 | 99.6093 | 76.9540 | 6629 | 28 | 6629 | 26 | 6 | 23.0769 | |
| anovak-vg | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0.0000 | 87.6777 | 1 | 0 | 0 | 26 | 2 | 7.6923 | |
| anovak-vg | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0.0000 | 86.9347 | 1 | 0 | 0 | 26 | 2 | 7.6923 | |
| anovak-vg | INDEL | D1_5 | segdup | homalt | 93.5483 | 94.1504 | 92.9539 | 93.9028 | 338 | 21 | 343 | 26 | 18 | 69.2308 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.7340 | 94.7522 | 92.7374 | 52.4568 | 325 | 18 | 332 | 26 | 15 | 57.6923 | |
| anovak-vg | INDEL | D6_15 | segdup | het | 75.5396 | 76.0870 | 75.0000 | 93.8242 | 70 | 22 | 78 | 26 | 20 | 76.9231 | |
| ciseli-custom | SNP | tv | func_cds | homalt | 99.1797 | 99.8826 | 98.4866 | 26.8313 | 1702 | 2 | 1692 | 26 | 9 | 34.6154 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.0127 | 99.1870 | 94.9318 | 60.8397 | 488 | 4 | 487 | 26 | 25 | 96.1538 | |
| ckim-dragen | INDEL | * | map_siren | homalt | 98.9825 | 98.9454 | 99.0196 | 81.6305 | 2627 | 28 | 2626 | 26 | 15 | 57.6923 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.2572 | 99.6364 | 96.9158 | 68.2486 | 822 | 3 | 817 | 26 | 25 | 96.1538 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.2572 | 99.6364 | 96.9158 | 68.2486 | 822 | 3 | 817 | 26 | 25 | 96.1538 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.5586 | 96.7635 | 98.3668 | 86.6207 | 1465 | 49 | 1566 | 26 | 21 | 80.7692 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 23.5294 | 96.8893 | 0 | 0 | 8 | 26 | 7 | 26.9231 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 23.5294 | 96.8893 | 0 | 0 | 8 | 26 | 7 | 26.9231 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 48.0000 | 100.0000 | 31.5789 | 90.0000 | 1 | 0 | 12 | 26 | 5 | 19.2308 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 39.3162 | 33.8235 | 46.9388 | 96.7399 | 23 | 45 | 23 | 26 | 20 | 76.9231 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | homalt | 61.3636 | 79.4118 | 50.0000 | 87.9908 | 27 | 7 | 26 | 26 | 24 | 92.3077 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e0 | homalt | 61.5635 | 77.7778 | 50.9434 | 88.8889 | 28 | 8 | 27 | 26 | 24 | 92.3077 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e1 | homalt | 62.4135 | 78.3784 | 51.8519 | 88.9117 | 29 | 8 | 28 | 26 | 24 | 92.3077 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 49.2669 | 36.3636 | 76.3636 | 65.9443 | 88 | 154 | 84 | 26 | 25 | 96.1538 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 28.1655 | 19.4631 | 50.9434 | 80.0000 | 29 | 120 | 27 | 26 | 21 | 80.7692 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.8445 | 97.7707 | 97.9183 | 79.2041 | 1228 | 28 | 1223 | 26 | 7 | 26.9231 | |
| ckim-gatk | INDEL | I1_5 | HG002complexvar | het | 99.7716 | 99.6866 | 99.8566 | 58.0913 | 18132 | 57 | 18110 | 26 | 13 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 96.5482 | 98.1891 | 94.9612 | 92.2054 | 488 | 9 | 490 | 26 | 1 | 3.8462 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 96.6215 | 98.2283 | 95.0664 | 92.2237 | 499 | 9 | 501 | 26 | 1 | 3.8462 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.0480 | 100.0000 | 96.1708 | 73.2150 | 653 | 0 | 653 | 26 | 25 | 96.1538 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.1964 | 100.0000 | 89.0295 | 69.3402 | 211 | 0 | 211 | 26 | 25 | 96.1538 | |
| ckim-gatk | SNP | ti | HG002complexvar | homalt | 99.3341 | 98.6902 | 99.9864 | 18.4846 | 190929 | 2534 | 190919 | 26 | 23 | 88.4615 | |
| ckim-gatk | SNP | ti | HG002compoundhet | * | 99.4312 | 99.0159 | 99.8500 | 36.2044 | 17306 | 172 | 17306 | 26 | 21 | 80.7692 | |
| ckim-gatk | SNP | tv | HG002compoundhet | * | 99.2966 | 98.8905 | 99.7061 | 49.4688 | 8824 | 99 | 8821 | 26 | 17 | 65.3846 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 63.5631 | 57.2581 | 71.4286 | 99.8537 | 71 | 53 | 65 | 26 | 10 | 38.4615 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | het | 96.3484 | 97.6654 | 95.0664 | 90.7186 | 502 | 12 | 501 | 26 | 2 | 7.6923 | |