PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67101-67150 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 89.5255 | 86.7232 | 92.5150 | 65.8836 | 307 | 47 | 309 | 25 | 25 | 100.0000 | |
| mlin-fermikit | SNP | tv | func_cds | * | 99.2667 | 99.1078 | 99.4262 | 22.7208 | 4332 | 39 | 4332 | 25 | 14 | 56.0000 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | het | 76.6355 | 100.0000 | 62.1212 | 94.9309 | 37 | 0 | 41 | 25 | 5 | 20.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.0385 | 86.3032 | 96.3235 | 58.6123 | 649 | 103 | 655 | 25 | 25 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | * | hetalt | 79.3637 | 66.7779 | 97.7954 | 49.1480 | 1401 | 697 | 1109 | 25 | 20 | 80.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 65.2983 | 56.3218 | 77.6786 | 69.6477 | 49 | 38 | 87 | 25 | 15 | 60.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 83.1234 | 93.2203 | 75.0000 | 71.9101 | 55 | 4 | 75 | 25 | 18 | 72.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.2450 | 99.0076 | 99.4836 | 62.5686 | 4789 | 48 | 4816 | 25 | 3 | 12.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1764 | 99.1423 | 99.2106 | 64.9939 | 3121 | 27 | 3142 | 25 | 3 | 12.0000 | |
| ltrigg-rtg2 | SNP | tv | HG002compoundhet | het | 99.1949 | 98.9300 | 99.4612 | 50.0484 | 4623 | 50 | 4615 | 25 | 5 | 20.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | het | 98.4494 | 97.1855 | 99.7466 | 54.4068 | 9841 | 285 | 9840 | 25 | 2 | 8.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 69.4864 | 63.7097 | 76.4151 | 99.9162 | 79 | 45 | 81 | 25 | 24 | 96.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | het | 62.0720 | 46.3158 | 94.0758 | 82.6051 | 396 | 459 | 397 | 25 | 12 | 48.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.8519 | 93.3333 | 35.8974 | 93.7898 | 14 | 1 | 14 | 25 | 7 | 28.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | het | 62.2222 | 66.6667 | 58.3333 | 92.7449 | 34 | 17 | 35 | 25 | 10 | 40.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.0394 | 97.9699 | 98.1089 | 39.1064 | 1303 | 27 | 1297 | 25 | 25 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | homalt | 65.0307 | 62.3529 | 67.9487 | 83.1533 | 53 | 32 | 53 | 25 | 21 | 84.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.1761 | 91.8265 | 98.7793 | 33.6573 | 2011 | 179 | 2023 | 25 | 22 | 88.0000 | |
| ndellapenna-hhga | SNP | ti | map_l125_m0_e0 | het | 98.4376 | 97.2165 | 99.6897 | 74.3678 | 8033 | 230 | 8033 | 25 | 12 | 48.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | het | 98.2879 | 97.1825 | 99.4189 | 73.8528 | 4277 | 124 | 4277 | 25 | 11 | 44.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6112 | 97.5894 | 99.6546 | 48.0405 | 7206 | 178 | 7214 | 25 | 15 | 60.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | het | 98.5457 | 97.9487 | 99.1499 | 50.4465 | 3056 | 64 | 2916 | 25 | 8 | 32.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.0626 | 98.7852 | 99.3416 | 58.5661 | 3822 | 47 | 3772 | 25 | 22 | 88.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.5228 | 97.5359 | 99.5300 | 31.9212 | 5304 | 134 | 5294 | 25 | 25 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | * | 98.2838 | 96.7501 | 99.8669 | 59.4717 | 18755 | 630 | 18753 | 25 | 4 | 16.0000 | |
| ltrigg-rtg2 | SNP | * | map_siren | homalt | 99.8557 | 99.7571 | 99.9546 | 50.5157 | 55022 | 134 | 55010 | 25 | 22 | 88.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.0387 | 90.3226 | 82.1429 | 92.1875 | 112 | 12 | 115 | 25 | 5 | 20.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.2394 | 90.3138 | 96.3610 | 69.7623 | 662 | 71 | 662 | 25 | 18 | 72.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | * | 97.6748 | 97.2347 | 98.1189 | 98.7054 | 1301 | 37 | 1304 | 25 | 9 | 36.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e0 | * | 97.7543 | 97.3011 | 98.2117 | 98.7639 | 1370 | 38 | 1373 | 25 | 9 | 36.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.3676 | 96.3218 | 94.4321 | 66.5425 | 419 | 16 | 424 | 25 | 17 | 68.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.4626 | 97.6139 | 97.3118 | 72.5745 | 900 | 22 | 905 | 25 | 15 | 60.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m1_e0 | het | 47.9644 | 43.3333 | 53.7037 | 97.5785 | 26 | 34 | 29 | 25 | 3 | 12.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m2_e0 | het | 50.5360 | 45.4545 | 56.8966 | 97.6697 | 30 | 36 | 33 | 25 | 3 | 12.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m2_e1 | het | 50.5360 | 45.4545 | 56.8966 | 97.7255 | 30 | 36 | 33 | 25 | 3 | 12.0000 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.8522 | 97.4079 | 98.3005 | 42.9181 | 1428 | 38 | 1446 | 25 | 22 | 88.0000 | |
| astatham-gatk | INDEL | D16_PLUS | * | homalt | 99.1187 | 99.7045 | 98.5397 | 70.8497 | 1687 | 5 | 1687 | 25 | 20 | 80.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8086 | 99.5997 | 98.0299 | 75.0492 | 1244 | 5 | 1244 | 25 | 20 | 80.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8086 | 99.5997 | 98.0299 | 75.0492 | 1244 | 5 | 1244 | 25 | 20 | 80.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.5098 | 95.4885 | 99.6185 | 24.8854 | 6519 | 308 | 6528 | 25 | 24 | 96.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 97.0895 | 96.5074 | 97.6787 | 87.4226 | 1050 | 38 | 1052 | 25 | 5 | 20.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 96.9583 | 96.1505 | 97.7798 | 88.0289 | 1099 | 44 | 1101 | 25 | 5 | 20.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m2_e1 | * | 96.9505 | 96.1106 | 97.8051 | 88.0870 | 1112 | 45 | 1114 | 25 | 5 | 20.0000 | |
| astatham-gatk | INDEL | D6_15 | HG002complexvar | het | 99.0140 | 98.8462 | 99.1825 | 59.3945 | 3084 | 36 | 3033 | 25 | 19 | 76.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0053 | 96.4936 | 99.5651 | 50.8758 | 5724 | 208 | 5724 | 25 | 23 | 92.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.4072 | 100.0000 | 89.4068 | 69.3904 | 211 | 0 | 211 | 25 | 24 | 96.0000 | |
| asubramanian-gatk | INDEL | D1_5 | HG002complexvar | het | 99.2391 | 98.6082 | 99.8781 | 56.4759 | 20476 | 289 | 20484 | 25 | 15 | 60.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.4931 | 99.5753 | 99.4111 | 78.7569 | 4220 | 18 | 4220 | 25 | 5 | 20.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 28.5714 | 100.0000 | 16.6667 | 92.7361 | 1 | 0 | 5 | 25 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 24.2424 | 100.0000 | 13.7931 | 91.4454 | 1 | 0 | 4 | 25 | 0 | 0.0000 | |