PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66051-66100 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6571 | 96.7320 | 98.6000 | 85.4100 | 1480 | 50 | 1479 | 21 | 15 | 71.4286 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6571 | 96.7320 | 98.6000 | 85.4100 | 1480 | 50 | 1479 | 21 | 15 | 71.4286 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1346 | 97.5265 | 92.8571 | 69.6281 | 276 | 7 | 273 | 21 | 21 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | het | 95.2520 | 94.7686 | 95.7404 | 89.4183 | 471 | 26 | 472 | 21 | 3 | 14.2857 | |
| ckim-dragen | INDEL | I6_15 | HG002compoundhet | het | 92.5867 | 97.1154 | 88.4615 | 85.5556 | 202 | 6 | 161 | 21 | 20 | 95.2381 | |
| ckim-dragen | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.6894 | 98.0769 | 99.3097 | 69.5160 | 2958 | 58 | 3021 | 21 | 5 | 23.8095 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m0_e0 | het | 89.0022 | 96.2264 | 82.7869 | 94.8975 | 102 | 4 | 101 | 21 | 4 | 19.0476 | |
| gduggal-bwavard | SNP | * | map_l100_m0_e0 | homalt | 98.4857 | 97.1945 | 99.8116 | 63.6530 | 11294 | 326 | 11127 | 21 | 16 | 76.1905 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.8320 | 92.1659 | 99.8018 | 61.7166 | 10647 | 905 | 10577 | 21 | 11 | 52.3810 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.8320 | 92.1659 | 99.8018 | 61.7166 | 10647 | 905 | 10577 | 21 | 11 | 52.3810 | |
| gduggal-bwavard | SNP | tv | func_cds | * | 99.0223 | 98.5358 | 99.5136 | 36.8583 | 4307 | 64 | 4296 | 21 | 9 | 42.8571 | |
| gduggal-bwavard | SNP | tv | func_cds | het | 99.0001 | 98.7956 | 99.2054 | 42.2421 | 2625 | 32 | 2622 | 21 | 9 | 42.8571 | |
| gduggal-bwavard | SNP | tv | segdup | homalt | 98.3926 | 97.4676 | 99.3354 | 90.2442 | 3156 | 82 | 3139 | 21 | 19 | 90.4762 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 58.3333 | 59.5745 | 57.1429 | 50.5051 | 28 | 19 | 28 | 21 | 12 | 57.1429 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | homalt | 96.5853 | 94.9258 | 98.3037 | 87.2974 | 1216 | 65 | 1217 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e0 | * | 97.3150 | 97.3788 | 97.2513 | 89.0482 | 743 | 20 | 743 | 21 | 3 | 14.2857 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e1 | * | 97.3667 | 97.4293 | 97.3042 | 89.0328 | 758 | 20 | 758 | 21 | 3 | 14.2857 | |
| gduggal-bwafb | INDEL | D6_15 | * | hetalt | 90.9853 | 84.6464 | 98.3504 | 52.1249 | 6919 | 1255 | 1252 | 21 | 21 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.0511 | 96.3351 | 97.7778 | 77.6754 | 920 | 35 | 924 | 21 | 18 | 85.7143 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.7462 | 97.6596 | 95.8498 | 63.4393 | 459 | 11 | 485 | 21 | 18 | 85.7143 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.8556 | 84.1808 | 89.7059 | 59.6838 | 149 | 28 | 183 | 21 | 20 | 95.2381 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 88.0281 | 84.4498 | 91.9231 | 48.1038 | 353 | 65 | 239 | 21 | 21 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l125_m1_e0 | homalt | 99.4923 | 99.1127 | 99.8748 | 68.0895 | 16755 | 150 | 16755 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e0 | homalt | 99.4945 | 99.1137 | 99.8782 | 70.3251 | 17221 | 154 | 17221 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e1 | homalt | 99.4990 | 99.1216 | 99.8793 | 70.3837 | 17378 | 154 | 17378 | 21 | 13 | 61.9048 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | homalt | 97.2973 | 100.0000 | 94.7368 | 94.2878 | 359 | 0 | 378 | 21 | 20 | 95.2381 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 69.3912 | 74.4186 | 65.0000 | 63.6364 | 32 | 11 | 39 | 21 | 20 | 95.2381 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 70.3015 | 64.9123 | 76.6667 | 98.8432 | 37 | 20 | 69 | 21 | 16 | 76.1905 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | hetalt | 18.8152 | 10.4862 | 91.4634 | 56.9177 | 220 | 1878 | 225 | 21 | 21 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 27.1199 | 15.9420 | 90.7489 | 71.4824 | 143 | 754 | 206 | 21 | 19 | 90.4762 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | homalt | 99.8795 | 99.8756 | 99.8834 | 64.4482 | 18471 | 23 | 17986 | 21 | 12 | 57.1429 | |
| eyeh-varpipe | SNP | ti | tech_badpromoters | * | 88.8889 | 100.0000 | 80.0000 | 62.3656 | 85 | 0 | 84 | 21 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | tech_badpromoters | het | 80.3738 | 100.0000 | 67.1875 | 68.6275 | 44 | 0 | 43 | 21 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 69.1849 | 85.7143 | 58.0000 | 87.4372 | 36 | 6 | 29 | 21 | 4 | 19.0476 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.4340 | 97.8625 | 99.0122 | 43.9494 | 2106 | 46 | 2105 | 21 | 21 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | * | 96.5071 | 95.4649 | 97.5723 | 88.6736 | 842 | 40 | 844 | 21 | 5 | 23.8095 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 56.2500 | 93.5135 | 0 | 0 | 27 | 21 | 3 | 14.2857 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 47.5000 | 93.9940 | 0 | 0 | 19 | 21 | 3 | 14.2857 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 46.1538 | 96.6205 | 0 | 0 | 18 | 21 | 11 | 52.3810 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | homalt | 99.5892 | 99.2954 | 99.8846 | 63.9034 | 18180 | 129 | 18180 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e1 | homalt | 99.5933 | 99.3025 | 99.8858 | 63.9101 | 18365 | 129 | 18365 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | * | 96.6469 | 96.0784 | 97.2222 | 93.6095 | 735 | 30 | 735 | 21 | 6 | 28.5714 | |
| gduggal-bwaplat | INDEL | I16_PLUS | * | hetalt | 78.3575 | 65.0620 | 98.4827 | 54.0810 | 1365 | 733 | 1363 | 21 | 19 | 90.4762 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 72.0169 | 58.7500 | 93.0233 | 81.0095 | 282 | 198 | 280 | 21 | 14 | 66.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002compoundhet | hetalt | 83.2751 | 71.4771 | 99.7378 | 70.8280 | 7989 | 3188 | 7987 | 21 | 17 | 80.9524 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 87.7025 | 78.2609 | 99.7349 | 69.6723 | 7902 | 2195 | 7900 | 21 | 19 | 90.4762 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.4110 | 99.2557 | 99.5668 | 65.5731 | 4801 | 36 | 4827 | 21 | 3 | 14.2857 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3508 | 99.3647 | 99.3369 | 68.1260 | 3128 | 20 | 3146 | 21 | 3 | 14.2857 | |
| jmaeng-gatk | SNP | tv | map_l250_m0_e0 | * | 61.3757 | 45.4902 | 94.3089 | 98.2747 | 348 | 417 | 348 | 21 | 1 | 4.7619 | |
| jpowers-varprowl | INDEL | * | map_l250_m2_e0 | * | 91.3580 | 89.4260 | 93.3754 | 96.4605 | 296 | 35 | 296 | 21 | 12 | 57.1429 | |