PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66001-66050 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.9495 | 100.0000 | 90.3846 | 67.5000 | 188 | 0 | 188 | 20 | 19 | 95.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.5548 | 94.1128 | 99.1270 | 61.5152 | 2270 | 142 | 2271 | 20 | 15 | 75.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4172 | 99.3015 | 99.5333 | 49.8126 | 4265 | 30 | 4265 | 20 | 3 | 15.0000 | |
| ckim-gatk | SNP | ti | HG002compoundhet | het | 99.4351 | 99.0847 | 99.7881 | 40.5181 | 9418 | 87 | 9418 | 20 | 15 | 75.0000 | |
| ckim-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.9370 | 98.8636 | 99.0104 | 68.9077 | 2001 | 23 | 2001 | 20 | 7 | 35.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4448 | 99.3729 | 99.5169 | 82.8933 | 4120 | 26 | 4120 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | * | 77.9687 | 64.4993 | 98.5486 | 87.4682 | 1359 | 748 | 1358 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | * | 78.3417 | 64.9818 | 98.6169 | 88.3010 | 1427 | 769 | 1426 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | * | 78.4183 | 65.0787 | 98.6367 | 88.3507 | 1448 | 777 | 1447 | 20 | 8 | 40.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.4471 | 97.6589 | 93.3333 | 93.6299 | 292 | 7 | 294 | 21 | 1 | 4.7619 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5905 | 97.7346 | 93.5385 | 94.1746 | 302 | 7 | 304 | 21 | 1 | 4.7619 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.6989 | 97.7918 | 93.6937 | 94.1905 | 310 | 7 | 312 | 21 | 1 | 4.7619 | |
| ckim-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.1672 | 98.9840 | 99.3511 | 65.9333 | 3215 | 33 | 3215 | 21 | 8 | 38.0952 | |
| ckim-gatk | SNP | tv | HG002compoundhet | het | 99.2595 | 98.9728 | 99.5478 | 55.8932 | 4625 | 48 | 4623 | 21 | 13 | 61.9048 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.0708 | 69.3739 | 97.5118 | 50.5855 | 820 | 362 | 823 | 21 | 20 | 95.2381 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.9633 | 76.1261 | 88.7701 | 48.1994 | 169 | 53 | 166 | 21 | 16 | 76.1905 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 69.2913 | 80.0000 | 61.1111 | 70.0000 | 40 | 10 | 33 | 21 | 16 | 76.1905 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2860 | 97.0041 | 97.5694 | 83.2558 | 939 | 29 | 843 | 21 | 16 | 76.1905 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.9514 | 98.2249 | 76.4045 | 86.5356 | 166 | 3 | 68 | 21 | 20 | 95.2381 | |
| cchapple-custom | INDEL | * | map_siren | homalt | 98.6746 | 98.1544 | 99.2003 | 78.4454 | 2606 | 49 | 2605 | 21 | 13 | 61.9048 | |
| cchapple-custom | INDEL | C6_15 | HG002complexvar | het | 95.9847 | 100.0000 | 92.2794 | 83.1056 | 4 | 0 | 251 | 21 | 10 | 47.6190 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.5861 | 95.4119 | 97.7895 | 64.6446 | 915 | 44 | 929 | 21 | 20 | 95.2381 | |
| cchapple-custom | INDEL | D16_PLUS | map_siren | * | 85.4653 | 85.3147 | 85.6164 | 91.3558 | 122 | 21 | 125 | 21 | 10 | 47.6190 | |
| cchapple-custom | INDEL | D6_15 | HG002complexvar | homalt | 98.6845 | 99.2301 | 98.1449 | 51.7682 | 1160 | 9 | 1111 | 21 | 21 | 100.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 8.6957 | 97.4918 | 0 | 0 | 2 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 8.6957 | 97.5162 | 0 | 0 | 2 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.5926 | 94.7867 | 90.4977 | 51.4286 | 200 | 11 | 200 | 21 | 19 | 90.4762 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 43.8881 | 34.0206 | 61.8182 | 89.1304 | 33 | 64 | 34 | 21 | 15 | 71.4286 | |
| ciseli-custom | INDEL | D16_PLUS | map_siren | homalt | 60.7595 | 70.5882 | 53.3333 | 89.9103 | 24 | 10 | 24 | 21 | 16 | 76.1905 | |
| ciseli-custom | INDEL | D1_5 | func_cds | * | 91.8919 | 96.2264 | 87.9310 | 36.2637 | 153 | 6 | 153 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 50.5495 | 48.9362 | 52.2727 | 95.2586 | 23 | 24 | 23 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 48.9837 | 34.5566 | 84.0909 | 86.4615 | 113 | 214 | 111 | 21 | 18 | 85.7143 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 59.2593 | 66.6667 | 53.3333 | 64.0000 | 24 | 12 | 24 | 21 | 20 | 95.2381 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.8125 | 99.9061 | 99.7191 | 40.4113 | 7445 | 7 | 7455 | 21 | 2 | 9.5238 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.7237 | 99.8934 | 99.5546 | 42.4719 | 4684 | 5 | 4694 | 21 | 2 | 9.5238 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.0612 | 88.8224 | 97.7248 | 55.9006 | 890 | 112 | 902 | 21 | 19 | 90.4762 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 95.7437 | 95.6790 | 95.8084 | 86.4814 | 465 | 21 | 480 | 21 | 5 | 23.8095 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | het | 95.7357 | 95.5734 | 95.8984 | 87.7950 | 475 | 22 | 491 | 21 | 5 | 23.8095 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 95.8267 | 95.6693 | 95.9847 | 87.8457 | 486 | 22 | 502 | 21 | 5 | 23.8095 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.5026 | 97.4692 | 99.5582 | 62.4506 | 1502 | 39 | 4732 | 21 | 16 | 76.1905 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.6929 | 100.0000 | 93.5976 | 67.5248 | 311 | 0 | 307 | 21 | 20 | 95.2381 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8835 | 99.8894 | 99.8776 | 53.9498 | 17158 | 19 | 17135 | 21 | 9 | 42.8571 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3270 | 99.3199 | 99.3340 | 66.8350 | 3067 | 21 | 3132 | 21 | 9 | 42.8571 | |
| ciseli-custom | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 4.5455 | 90.6383 | 0 | 0 | 1 | 21 | 12 | 57.1429 | |
| ciseli-custom | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 89.7059 | 0 | 0 | 0 | 21 | 12 | 57.1429 | ||
| ciseli-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 19.2308 | 93.6893 | 0 | 0 | 5 | 21 | 5 | 23.8095 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4929 | 96.4286 | 96.5574 | 68.3610 | 594 | 22 | 589 | 21 | 20 | 95.2381 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | het | 79.3959 | 94.1176 | 68.6567 | 96.4037 | 48 | 3 | 46 | 21 | 3 | 14.2857 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | het | 85.1126 | 94.8718 | 77.1739 | 96.1842 | 74 | 4 | 71 | 21 | 1 | 4.7619 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m0_e0 | * | 96.1805 | 96.5726 | 95.7916 | 89.1262 | 479 | 17 | 478 | 21 | 3 | 14.2857 | |