PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65951-66000 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I1_5 | HG002complexvar | het | 99.1051 | 98.3342 | 99.8882 | 58.4164 | 17886 | 303 | 17868 | 20 | 13 | 65.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.2241 | 93.9024 | 83.1933 | 72.9545 | 77 | 5 | 99 | 20 | 18 | 90.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.0574 | 96.7213 | 97.3958 | 75.1053 | 472 | 16 | 748 | 20 | 14 | 70.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.2277 | 92.8571 | 66.1017 | 96.4046 | 39 | 3 | 39 | 20 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | HG002complexvar | het | 99.7743 | 99.6591 | 99.8897 | 57.8575 | 18127 | 62 | 18108 | 20 | 10 | 50.0000 | |
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | homalt | 99.7275 | 99.5741 | 99.8813 | 63.4132 | 16833 | 72 | 16833 | 20 | 15 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | homalt | 99.7291 | 99.5741 | 99.8845 | 66.0253 | 17301 | 74 | 17301 | 20 | 15 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e1 | homalt | 99.7315 | 99.5779 | 99.8856 | 66.0476 | 17458 | 74 | 17458 | 20 | 15 | 75.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4691 | 99.4211 | 99.5171 | 82.2582 | 4122 | 24 | 4122 | 20 | 7 | 35.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 96.0913 | 95.6007 | 96.5870 | 86.7899 | 565 | 26 | 566 | 20 | 2 | 10.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7390 | 98.7601 | 98.7179 | 73.4197 | 1593 | 20 | 1540 | 20 | 15 | 75.0000 | |
| asubramanian-gatk | SNP | tv | * | homalt | 98.7491 | 97.5342 | 99.9946 | 20.2324 | 367824 | 9299 | 367810 | 20 | 17 | 85.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 53.3333 | 92.3077 | 37.5000 | 79.6178 | 12 | 1 | 12 | 20 | 1 | 5.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 60.0000 | 100.0000 | 42.8571 | 84.3049 | 15 | 0 | 15 | 20 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 60.0000 | 100.0000 | 42.8571 | 84.3049 | 15 | 0 | 15 | 20 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m1_e0 | het | 98.2302 | 99.1736 | 97.3046 | 87.1892 | 720 | 6 | 722 | 20 | 3 | 15.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e0 | het | 98.3172 | 99.2147 | 97.4359 | 87.7185 | 758 | 6 | 760 | 20 | 3 | 15.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e1 | het | 98.3302 | 99.2208 | 97.4555 | 87.7969 | 764 | 6 | 766 | 20 | 3 | 15.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2175 | 98.9717 | 97.4747 | 89.6498 | 770 | 8 | 772 | 20 | 5 | 25.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 78.2609 | 96.7537 | 0 | 0 | 72 | 20 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 75.9036 | 96.3850 | 0 | 0 | 63 | 20 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 9.0909 | 97.3430 | 0 | 0 | 2 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 13.0435 | 94.6009 | 0 | 0 | 3 | 20 | 7 | 35.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 44.1674 | 34.4444 | 61.5385 | 89.4737 | 31 | 59 | 32 | 20 | 14 | 70.0000 | |
| ciseli-custom | INDEL | D1_5 | func_cds | het | 88.2979 | 97.6471 | 80.5825 | 43.4066 | 83 | 2 | 83 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 58.7127 | 55.0000 | 62.9630 | 92.9412 | 33 | 27 | 34 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 55.7377 | 70.8333 | 45.9459 | 88.1029 | 17 | 7 | 17 | 20 | 19 | 95.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 50.0000 | 47.8261 | 52.3810 | 95.3998 | 22 | 24 | 22 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 41.7093 | 29.6774 | 70.1493 | 82.9517 | 46 | 109 | 47 | 20 | 19 | 95.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 39.5480 | 83.3333 | 25.9259 | 83.4356 | 5 | 1 | 7 | 20 | 1 | 5.0000 | |
| ckim-dragen | INDEL | * | map_l250_m1_e0 | het | 92.0043 | 94.2105 | 89.8990 | 96.4744 | 179 | 11 | 178 | 20 | 2 | 10.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e0 | het | 92.7521 | 94.7619 | 90.8257 | 96.6436 | 199 | 11 | 198 | 20 | 2 | 10.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e1 | het | 92.7858 | 94.7867 | 90.8676 | 96.7304 | 200 | 11 | 199 | 20 | 2 | 10.0000 | |
| cchapple-custom | SNP | * | segdup | homalt | 99.8463 | 99.8790 | 99.8136 | 87.7694 | 10730 | 13 | 10710 | 20 | 20 | 100.0000 | |
| cchapple-custom | SNP | tv | * | homalt | 99.9396 | 99.8847 | 99.9947 | 18.4432 | 376688 | 435 | 376084 | 20 | 17 | 85.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4934 | 99.9080 | 99.0821 | 64.7126 | 2172 | 2 | 2159 | 20 | 1 | 5.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2795 | 100.0000 | 98.5694 | 67.5186 | 1387 | 0 | 1378 | 20 | 1 | 5.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.9319 | 97.2574 | 98.6159 | 84.9620 | 1383 | 39 | 1425 | 20 | 10 | 50.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 25.9259 | 96.9799 | 0 | 0 | 7 | 20 | 7 | 35.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 25.9259 | 96.9799 | 0 | 0 | 7 | 20 | 7 | 35.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | het | 78.9957 | 93.7500 | 68.2540 | 96.5385 | 45 | 3 | 43 | 20 | 2 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8273 | 99.7901 | 99.8645 | 55.6157 | 14739 | 31 | 14740 | 20 | 5 | 25.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | het | 95.2424 | 94.6502 | 95.8420 | 88.2223 | 460 | 26 | 461 | 20 | 3 | 15.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | * | 95.4459 | 94.7269 | 96.1759 | 90.8774 | 503 | 28 | 503 | 20 | 5 | 25.0000 | |
| ckim-dragen | SNP | ti | map_l100_m1_e0 | homalt | 99.6288 | 99.3708 | 99.8881 | 54.6776 | 17847 | 113 | 17852 | 20 | 19 | 95.0000 | |
| ckim-gatk | INDEL | D16_PLUS | HG002complexvar | het | 98.3088 | 98.9160 | 97.7090 | 68.8770 | 1095 | 12 | 853 | 20 | 10 | 50.0000 | |
| ckim-gatk | INDEL | D16_PLUS | HG002compoundhet | homalt | 44.4444 | 100.0000 | 28.5714 | 72.5490 | 8 | 0 | 8 | 20 | 20 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.4848 | 99.7211 | 97.2789 | 61.7387 | 715 | 2 | 715 | 20 | 19 | 95.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6971 | 98.2332 | 93.2886 | 69.7769 | 278 | 5 | 278 | 20 | 20 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 96.2697 | 98.4663 | 94.1691 | 91.3906 | 321 | 5 | 323 | 20 | 0 | 0.0000 | |