PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65801-65850 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | * | segdup | * | 98.9993 | 98.7872 | 99.2123 | 93.0351 | 2525 | 31 | 2519 | 20 | 5 | 25.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 4.7619 | 75.0000 | 0 | 1 | 1 | 20 | 3 | 15.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 4.7619 | 75.0000 | 0 | 1 | 1 | 20 | 3 | 15.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.8785 | 95.3488 | 92.4528 | 68.3014 | 246 | 12 | 245 | 20 | 12 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.7890 | 70.2703 | 63.6364 | 84.0116 | 52 | 22 | 35 | 20 | 5 | 25.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.1717 | 93.7669 | 94.5799 | 81.8940 | 346 | 23 | 349 | 20 | 7 | 35.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 70.7469 | 84.6154 | 60.7843 | 57.8512 | 11 | 2 | 31 | 20 | 2 | 10.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | het | 93.6777 | 93.9799 | 93.3775 | 88.3891 | 281 | 18 | 282 | 20 | 3 | 15.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | het | 93.8813 | 94.1748 | 93.5897 | 89.6242 | 291 | 18 | 292 | 20 | 3 | 15.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 38.2166 | 24.5902 | 85.7143 | 80.9783 | 120 | 368 | 120 | 20 | 20 | 100.0000 | |
| gduggal-snapplat | SNP | tv | func_cds | * | 99.2890 | 99.0391 | 99.5401 | 39.3276 | 4329 | 42 | 4329 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | func_cds | het | 99.1144 | 98.9838 | 99.2453 | 45.4845 | 2630 | 27 | 2630 | 20 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | segdup | homalt | 87.9737 | 80.1042 | 97.5580 | 91.2900 | 769 | 191 | 799 | 20 | 20 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 31.0345 | 97.5753 | 0 | 0 | 9 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 20.0000 | 97.5938 | 0 | 0 | 5 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 31.0345 | 97.8097 | 0 | 0 | 9 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 20.0000 | 97.8430 | 0 | 0 | 5 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 31.0345 | 97.8582 | 0 | 0 | 9 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 20.0000 | 97.8939 | 0 | 0 | 5 | 20 | 1 | 5.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | het | 82.4328 | 77.6224 | 87.8788 | 67.1968 | 111 | 32 | 145 | 20 | 18 | 90.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 39.0387 | 28.0303 | 64.2857 | 93.0175 | 37 | 95 | 36 | 20 | 6 | 30.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | homalt | 84.6016 | 75.1366 | 96.7949 | 89.4755 | 550 | 182 | 604 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | homalt | 84.9635 | 75.6225 | 96.9372 | 90.0183 | 577 | 186 | 633 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e1 | homalt | 84.7865 | 75.3230 | 96.9697 | 90.1183 | 583 | 191 | 640 | 20 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 2.1951 | 1.1236 | 47.3684 | 61.6162 | 1 | 88 | 18 | 20 | 12 | 60.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 3.6290 | 1.8868 | 47.3684 | 61.2245 | 1 | 52 | 18 | 20 | 12 | 60.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 27.3019 | 16.0247 | 92.1569 | 56.7063 | 104 | 545 | 235 | 20 | 18 | 90.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 73.7913 | 59.3427 | 97.5400 | 44.2387 | 632 | 433 | 793 | 20 | 13 | 65.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | * | 80.7499 | 74.8538 | 87.6543 | 97.7406 | 128 | 43 | 142 | 20 | 5 | 25.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | het | 80.9816 | 79.2793 | 82.7586 | 97.8940 | 88 | 23 | 96 | 20 | 5 | 25.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_siren | het | 45.1091 | 32.1429 | 75.6098 | 90.5093 | 90 | 190 | 62 | 20 | 2 | 10.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | * | 81.2121 | 76.1364 | 87.0130 | 96.7157 | 134 | 42 | 134 | 20 | 1 | 5.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | homalt | 95.9129 | 92.2138 | 99.9212 | 63.8760 | 25380 | 2143 | 25364 | 20 | 15 | 75.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | homalt | 95.9332 | 92.2507 | 99.9220 | 63.8706 | 25642 | 2154 | 25625 | 20 | 15 | 75.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | * | 95.0715 | 96.4516 | 93.7304 | 91.7974 | 299 | 11 | 299 | 20 | 6 | 30.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m1_e0 | * | 72.3810 | 66.6667 | 79.1667 | 87.9093 | 76 | 38 | 76 | 20 | 16 | 80.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e0 | * | 72.3005 | 66.3793 | 79.3814 | 88.9647 | 77 | 39 | 77 | 20 | 16 | 80.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 72.3005 | 66.3793 | 79.3814 | 89.1134 | 77 | 39 | 77 | 20 | 16 | 80.0000 | |
| ghariani-varprowl | SNP | ti | map_l125_m1_e0 | homalt | 99.2029 | 98.5967 | 99.8167 | 66.5358 | 10890 | 155 | 10890 | 20 | 15 | 75.0000 | |
| ghariani-varprowl | SNP | ti | map_l125_m2_e0 | homalt | 99.2250 | 98.6353 | 99.8218 | 69.1124 | 11203 | 155 | 11203 | 20 | 15 | 75.0000 | |
| ghariani-varprowl | SNP | ti | map_l125_m2_e1 | homalt | 99.2318 | 98.6472 | 99.8234 | 69.1261 | 11303 | 155 | 11303 | 20 | 15 | 75.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | * | 97.6365 | 96.7330 | 98.5570 | 88.7837 | 1362 | 46 | 1366 | 20 | 4 | 20.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 90.6416 | 91.6129 | 89.6907 | 78.8210 | 142 | 13 | 174 | 20 | 19 | 95.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 31.0781 | 20.3704 | 65.5172 | 56.3910 | 22 | 86 | 38 | 20 | 20 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 70.1097 | 58.8235 | 86.7550 | 74.5791 | 30 | 21 | 131 | 20 | 8 | 40.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e1 | het | 97.2633 | 97.2441 | 97.2826 | 84.5216 | 494 | 14 | 716 | 20 | 12 | 60.0000 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | * | 81.1709 | 76.0000 | 87.0968 | 88.6197 | 133 | 42 | 135 | 20 | 20 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | homalt | 99.8788 | 99.8719 | 99.8856 | 62.1452 | 17937 | 23 | 17464 | 20 | 12 | 60.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | homalt | 99.8811 | 99.8744 | 99.8878 | 64.4546 | 18286 | 23 | 17806 | 20 | 12 | 60.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 73.3373 | 87.8049 | 62.9630 | 84.4380 | 36 | 5 | 34 | 20 | 7 | 35.0000 | |