PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65401-65450 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | het | 98.5474 | 97.7564 | 99.3513 | 51.5467 | 3050 | 70 | 2910 | 19 | 5 | 26.3158 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.2468 | 97.8723 | 98.6242 | 69.6350 | 1334 | 29 | 1362 | 19 | 4 | 21.0526 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | * | 98.3998 | 97.4709 | 99.3466 | 77.4486 | 2929 | 76 | 2889 | 19 | 3 | 15.7895 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.1505 | 94.9192 | 99.4892 | 54.6175 | 3699 | 198 | 3701 | 19 | 11 | 57.8947 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5807 | 99.2754 | 99.8880 | 68.6524 | 16852 | 123 | 16941 | 19 | 8 | 42.1053 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5807 | 99.2754 | 99.8880 | 68.6524 | 16852 | 123 | 16941 | 19 | 8 | 42.1053 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7350 | 99.7281 | 99.7420 | 30.1101 | 7335 | 20 | 7346 | 19 | 4 | 21.0526 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | het | 98.0426 | 96.3815 | 99.7620 | 61.0832 | 7964 | 299 | 7964 | 19 | 3 | 15.7895 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | * | 98.4887 | 97.3006 | 99.7063 | 64.1567 | 6452 | 179 | 6450 | 19 | 4 | 21.0526 | |
| ltrigg-rtg1 | SNP | tv | segdup | homalt | 99.6765 | 99.9382 | 99.4161 | 89.9204 | 3236 | 2 | 3235 | 19 | 19 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | * | 97.1053 | 95.5214 | 98.7426 | 78.1490 | 1493 | 70 | 1492 | 19 | 2 | 10.5263 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 20.3390 | 13.7931 | 38.7097 | 86.2222 | 12 | 75 | 12 | 19 | 18 | 94.7368 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 39.6992 | 40.7407 | 38.7097 | 83.7696 | 11 | 16 | 12 | 19 | 18 | 94.7368 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.8070 | 15.8537 | 40.6250 | 85.9649 | 13 | 69 | 13 | 19 | 12 | 63.1579 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | * | 94.2615 | 92.2652 | 96.3462 | 85.0575 | 501 | 42 | 501 | 19 | 12 | 63.1579 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | * | 93.8224 | 91.5254 | 96.2376 | 90.4986 | 486 | 45 | 486 | 19 | 11 | 57.8947 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 77.9385 | 92.6829 | 67.2414 | 94.0695 | 38 | 3 | 39 | 19 | 6 | 31.5789 | |
| jpowers-varprowl | SNP | ti | map_l125_m1_e0 | homalt | 99.2166 | 98.6148 | 99.8259 | 68.6168 | 10892 | 153 | 10892 | 19 | 15 | 78.9474 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e0 | homalt | 99.2383 | 98.6529 | 99.8307 | 70.9546 | 11205 | 153 | 11205 | 19 | 15 | 78.9474 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e1 | homalt | 99.2450 | 98.6647 | 99.8322 | 70.9730 | 11305 | 153 | 11305 | 19 | 15 | 78.9474 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.0159 | 93.8240 | 98.3126 | 56.1185 | 1109 | 73 | 1107 | 19 | 18 | 94.7368 | |
| jli-custom | INDEL | D16_PLUS | * | homalt | 99.0858 | 99.2908 | 98.8817 | 67.1754 | 1680 | 12 | 1680 | 19 | 13 | 68.4211 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7625 | 99.0392 | 98.4873 | 71.5773 | 1237 | 12 | 1237 | 19 | 13 | 68.4211 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7625 | 99.0392 | 98.4873 | 71.5773 | 1237 | 12 | 1237 | 19 | 13 | 68.4211 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.6118 | 99.3853 | 99.8394 | 49.0173 | 11802 | 73 | 11810 | 19 | 12 | 63.1579 | |
| jli-custom | INDEL | D1_5 | map_l100_m1_e0 | het | 98.6387 | 98.8420 | 98.4362 | 81.9143 | 1195 | 14 | 1196 | 19 | 5 | 26.3158 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 98.6492 | 98.8057 | 98.4933 | 82.5249 | 1241 | 15 | 1242 | 19 | 5 | 26.3158 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 98.6620 | 98.8170 | 98.5075 | 82.6685 | 1253 | 15 | 1254 | 19 | 5 | 26.3158 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.5605 | 98.5736 | 98.5474 | 69.9656 | 1313 | 19 | 1289 | 19 | 14 | 73.6842 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.5030 | 90.1484 | 97.1168 | 71.5703 | 668 | 73 | 640 | 19 | 17 | 89.4737 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | * | 99.1622 | 98.8665 | 99.4596 | 79.2799 | 3489 | 40 | 3497 | 19 | 5 | 26.3158 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6822 | 97.8799 | 93.5811 | 68.4771 | 277 | 6 | 277 | 19 | 19 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.0343 | 98.3940 | 99.6831 | 76.6868 | 6004 | 98 | 5976 | 19 | 10 | 52.6316 | |
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.5255 | 97.4811 | 99.5925 | 63.6357 | 4644 | 120 | 4644 | 19 | 2 | 10.5263 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3020 | 98.3456 | 98.2585 | 85.8752 | 1070 | 18 | 1072 | 19 | 8 | 42.1053 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.3836 | 98.4252 | 98.3421 | 86.5303 | 1125 | 18 | 1127 | 19 | 8 | 42.1053 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.4031 | 98.4443 | 98.3621 | 86.6144 | 1139 | 18 | 1141 | 19 | 8 | 42.1053 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.3637 | 80.6250 | 95.3317 | 77.1605 | 387 | 93 | 388 | 19 | 18 | 94.7368 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.9646 | 94.4089 | 99.6626 | 61.7069 | 5606 | 332 | 5612 | 19 | 18 | 94.7368 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.6833 | 93.4426 | 95.9574 | 81.3344 | 456 | 32 | 451 | 19 | 18 | 94.7368 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.0809 | 95.6851 | 98.5179 | 60.2481 | 1264 | 57 | 1263 | 19 | 15 | 78.9474 | |
| rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.5167 | 99.4332 | 99.6003 | 68.5145 | 4737 | 27 | 4735 | 19 | 7 | 36.8421 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.0365 | 99.1497 | 98.9235 | 87.9760 | 1749 | 15 | 1746 | 19 | 14 | 73.6842 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | * | 96.8421 | 96.2092 | 97.4834 | 91.8033 | 736 | 29 | 736 | 19 | 14 | 73.6842 | |
| raldana-dualsentieon | SNP | * | map_l100_m1_e0 | homalt | 99.8258 | 99.7223 | 99.9295 | 56.9722 | 26928 | 75 | 26928 | 19 | 15 | 78.9474 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | homalt | 99.8291 | 99.7275 | 99.9308 | 59.5568 | 27448 | 75 | 27448 | 19 | 15 | 78.9474 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e1 | homalt | 99.8307 | 99.7302 | 99.9315 | 59.5367 | 27721 | 75 | 27721 | 19 | 15 | 78.9474 | |
| raldana-dualsentieon | SNP | * | map_siren | homalt | 99.8920 | 99.8187 | 99.9655 | 49.6673 | 55056 | 100 | 55047 | 19 | 19 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | * | 97.5579 | 97.2789 | 97.8385 | 99.0840 | 858 | 24 | 860 | 19 | 7 | 36.8421 | |
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | het | 97.3051 | 96.8421 | 97.7726 | 88.7274 | 828 | 27 | 834 | 19 | 5 | 26.3158 | |