PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65001-65050 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9624 | 98.4167 | 99.5141 | 71.6519 | 3481 | 56 | 3482 | 17 | 15 | 88.2353 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.7283 | 98.2659 | 95.2381 | 69.3299 | 340 | 6 | 340 | 17 | 13 | 76.4706 | |
| rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.3525 | 99.2706 | 99.4347 | 70.0110 | 2994 | 22 | 2990 | 17 | 6 | 35.2941 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.9798 | 99.3852 | 96.6135 | 70.8648 | 485 | 3 | 485 | 17 | 16 | 94.1176 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.2236 | 77.7778 | 82.8283 | 72.1910 | 105 | 30 | 82 | 17 | 16 | 94.1176 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1991 | 98.6599 | 99.7442 | 50.1650 | 6626 | 90 | 6628 | 17 | 7 | 41.1765 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | * | 98.5318 | 97.9978 | 99.0715 | 81.6035 | 1811 | 37 | 1814 | 17 | 5 | 29.4118 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | * | 98.5570 | 98.0157 | 99.1043 | 82.2749 | 1877 | 38 | 1881 | 17 | 5 | 29.4118 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | * | 98.5749 | 98.0402 | 99.1155 | 82.3896 | 1901 | 38 | 1905 | 17 | 5 | 29.4118 | |
| raldana-dualsentieon | INDEL | I1_5 | map_siren | het | 98.5075 | 98.0369 | 98.9826 | 78.7269 | 1648 | 33 | 1654 | 17 | 1 | 5.8824 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4108 | 95.7889 | 99.0885 | 72.8253 | 1888 | 83 | 1848 | 17 | 10 | 58.8235 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4108 | 95.7889 | 99.0885 | 72.8253 | 1888 | 83 | 1848 | 17 | 10 | 58.8235 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.4371 | 91.9154 | 99.2394 | 60.4914 | 2217 | 195 | 2218 | 17 | 11 | 64.7059 | |
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.8272 | 96.2865 | 99.4180 | 65.5827 | 2904 | 112 | 2904 | 17 | 1 | 5.8824 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | het | 97.0280 | 97.0280 | 97.0280 | 91.3647 | 555 | 17 | 555 | 17 | 12 | 70.5882 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0051 | 98.4010 | 99.6166 | 36.8952 | 4677 | 76 | 4677 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2372 | 98.7305 | 99.7490 | 37.0877 | 7155 | 92 | 7154 | 18 | 18 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 86.4388 | 78.8732 | 95.6098 | 71.0452 | 392 | 105 | 392 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.8153 | 96.5079 | 97.1246 | 67.5311 | 608 | 22 | 608 | 18 | 14 | 77.7778 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.9427 | 98.5704 | 99.3179 | 69.3175 | 2620 | 38 | 2621 | 18 | 14 | 77.7778 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.0002 | 95.9052 | 96.0954 | 70.9880 | 445 | 19 | 443 | 18 | 14 | 77.7778 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3458 | 99.4510 | 99.2408 | 86.4188 | 2355 | 13 | 2353 | 18 | 14 | 77.7778 | |
| rpoplin-dv42 | SNP | * | map_l150_m0_e0 | homalt | 98.7551 | 97.9702 | 99.5527 | 75.0450 | 4006 | 83 | 4006 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.6224 | 99.6697 | 99.5753 | 80.0565 | 4224 | 14 | 4220 | 18 | 10 | 55.5556 | |
| rpoplin-dv42 | SNP | ti | map_l100_m0_e0 | homalt | 99.4451 | 99.1253 | 99.7670 | 62.0330 | 7706 | 68 | 7706 | 18 | 17 | 94.4444 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | * | 97.1091 | 96.6013 | 97.6222 | 91.9886 | 739 | 26 | 739 | 18 | 2 | 11.1111 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.6418 | 89.6396 | 91.6667 | 81.6483 | 199 | 23 | 198 | 18 | 15 | 83.3333 | |
| rpoplin-dv42 | INDEL | * | map_siren | homalt | 99.1894 | 99.0584 | 99.3208 | 79.6138 | 2630 | 25 | 2632 | 18 | 11 | 61.1111 | |
| rpoplin-dv42 | INDEL | * | segdup | het | 98.8084 | 98.8404 | 98.7763 | 94.3566 | 1449 | 17 | 1453 | 18 | 17 | 94.4444 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.9493 | 99.5404 | 98.3651 | 65.9133 | 1083 | 5 | 1083 | 18 | 16 | 88.8889 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.2878 | 94.3032 | 98.3577 | 77.3927 | 1076 | 65 | 1078 | 18 | 15 | 83.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.3707 | 95.9702 | 98.8127 | 71.1458 | 1548 | 65 | 1498 | 18 | 13 | 72.2222 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.1850 | 99.4746 | 96.9283 | 66.0880 | 568 | 3 | 568 | 18 | 18 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.9951 | 96.7873 | 99.2334 | 74.5777 | 2380 | 79 | 2330 | 18 | 13 | 72.2222 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | * | 75.9931 | 69.8413 | 83.3333 | 84.8527 | 88 | 38 | 90 | 18 | 12 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | * | 75.8724 | 69.5312 | 83.4862 | 85.1499 | 89 | 39 | 91 | 18 | 12 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | segdup | * | 86.7731 | 83.7696 | 90.0000 | 91.8182 | 160 | 31 | 162 | 18 | 17 | 94.4444 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.3886 | 90.9836 | 85.9375 | 59.6215 | 111 | 11 | 110 | 18 | 18 | 100.0000 | |
| mlin-fermikit | SNP | ti | map_l150_m0_e0 | het | 44.5289 | 28.7424 | 98.7862 | 66.7936 | 1465 | 3632 | 1465 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 80.2198 | 0 | 0 | 0 | 18 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 59.0909 | 100.0000 | 41.9355 | 97.7714 | 12 | 0 | 13 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 62.5698 | 93.3333 | 47.0588 | 97.6918 | 14 | 1 | 16 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 66.4481 | 94.1176 | 51.3514 | 97.6206 | 16 | 1 | 19 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 84.7268 | 75.8065 | 96.0265 | 93.8384 | 376 | 120 | 435 | 18 | 15 | 83.3333 | |
| qzeng-custom | INDEL | D1_5 | segdup | het | 98.1482 | 98.6994 | 97.6032 | 95.6595 | 683 | 9 | 733 | 18 | 4 | 22.2222 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 82.7942 | 81.6901 | 83.9286 | 92.8297 | 58 | 13 | 94 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 82.7942 | 81.6901 | 83.9286 | 92.9204 | 58 | 13 | 94 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.6667 | 66.6667 | 66.6667 | 63.7584 | 2 | 1 | 36 | 18 | 12 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 82.8272 | 72.2222 | 97.0827 | 79.5966 | 390 | 150 | 599 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | I6_15 | func_cds | * | 79.2079 | 93.0233 | 68.9655 | 30.1205 | 40 | 3 | 40 | 18 | 3 | 16.6667 | |