PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64851-64900 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | * | 98.3102 | 97.0048 | 99.6513 | 87.8762 | 4858 | 150 | 4858 | 17 | 9 | 52.9412 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | * | 97.8332 | 96.3733 | 99.3380 | 86.1787 | 2551 | 96 | 2551 | 17 | 10 | 58.8235 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | het | 97.2703 | 95.5155 | 99.0909 | 86.8763 | 1853 | 87 | 1853 | 17 | 8 | 47.0588 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | het | 97.3057 | 95.5725 | 99.1029 | 86.9625 | 1878 | 87 | 1878 | 17 | 8 | 47.0588 | |
| qzeng-custom | INDEL | * | HG002complexvar | hetalt | 90.0705 | 82.9143 | 98.5786 | 66.1860 | 3067 | 632 | 1179 | 17 | 13 | 76.4706 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 10.5263 | 90.7767 | 0 | 0 | 2 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 63.8298 | 0 | 0 | 0 | 17 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 71.1864 | 97.3047 | 0 | 1 | 42 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 63.0435 | 97.3364 | 0 | 1 | 29 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 71.1864 | 97.3047 | 0 | 1 | 42 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 63.0435 | 97.3364 | 0 | 1 | 29 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 87.2038 | 90.1961 | 84.4037 | 69.2958 | 92 | 10 | 92 | 17 | 14 | 82.3529 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9557 | 99.5662 | 98.3527 | 76.9179 | 918 | 4 | 1015 | 17 | 6 | 35.2941 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | het | 85.1291 | 77.3913 | 94.5860 | 94.9534 | 267 | 78 | 297 | 17 | 14 | 82.3529 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 77.2082 | 72.8625 | 82.1053 | 86.6197 | 196 | 73 | 78 | 17 | 10 | 58.8235 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 82.5627 | 71.8147 | 97.0940 | 78.6652 | 372 | 146 | 568 | 17 | 3 | 17.6471 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 82.9231 | 72.3164 | 97.1761 | 79.6553 | 384 | 147 | 585 | 17 | 3 | 17.6471 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 78.1967 | 65.8436 | 96.2555 | 92.8784 | 320 | 166 | 437 | 17 | 9 | 52.9412 | |
| qzeng-custom | INDEL | I1_5 | map_siren | homalt | 90.0289 | 82.9208 | 98.4698 | 74.4832 | 1005 | 207 | 1094 | 17 | 4 | 23.5294 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6831 | 99.5234 | 99.8433 | 60.8736 | 10859 | 52 | 10830 | 17 | 7 | 41.1765 | |
| raldana-dualsentieon | INDEL | * | map_siren | homalt | 99.3604 | 99.3597 | 99.3611 | 79.7735 | 2638 | 17 | 2644 | 17 | 11 | 64.7059 | |
| ndellapenna-hhga | INDEL | * | map_l125_m0_e0 | het | 96.9382 | 96.7632 | 97.1138 | 88.6556 | 568 | 19 | 572 | 17 | 2 | 11.7647 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | het | 88.4651 | 96.1538 | 81.9149 | 90.0529 | 75 | 3 | 77 | 17 | 8 | 47.0588 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5687 | 99.2552 | 99.8842 | 53.3003 | 14660 | 110 | 14664 | 17 | 12 | 70.5882 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | het | 93.0123 | 97.0370 | 89.3082 | 87.6072 | 131 | 4 | 142 | 17 | 9 | 52.9412 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002complexvar | homalt | 94.6777 | 94.8220 | 94.5338 | 66.1957 | 293 | 16 | 294 | 17 | 10 | 58.8235 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | * | hetalt | 95.7476 | 92.6539 | 99.0550 | 39.6309 | 1791 | 142 | 1782 | 17 | 17 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.7426 | 92.6463 | 99.0529 | 39.5216 | 1789 | 142 | 1778 | 17 | 17 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.7537 | 92.8262 | 98.8719 | 34.2209 | 1501 | 116 | 1490 | 17 | 17 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.8598 | 93.2331 | 98.6389 | 71.3663 | 1240 | 90 | 1232 | 17 | 12 | 70.5882 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.6760 | 92.6622 | 98.8925 | 36.2012 | 1528 | 121 | 1518 | 17 | 17 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.7426 | 92.6463 | 99.0529 | 39.5216 | 1789 | 142 | 1778 | 17 | 17 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.1890 | 91.6575 | 99.0035 | 38.6331 | 1670 | 152 | 1689 | 17 | 16 | 94.1176 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 87.9958 | 80.4949 | 97.0383 | 67.7165 | 553 | 134 | 557 | 17 | 15 | 88.2353 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 82.6836 | 70.6547 | 99.6488 | 33.9430 | 4813 | 1999 | 4823 | 17 | 17 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | * | 74.9115 | 68.3761 | 82.8283 | 83.9286 | 80 | 37 | 82 | 17 | 11 | 64.7059 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 78.9545 | 65.5001 | 99.3652 | 25.9198 | 2639 | 1390 | 2661 | 17 | 17 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 95.9707 | 98.1273 | 93.9068 | 59.2105 | 262 | 5 | 262 | 17 | 17 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | HG002complexvar | hetalt | 80.4538 | 68.1930 | 98.0899 | 54.1945 | 834 | 389 | 873 | 17 | 17 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 61.1765 | 61.9048 | 60.4651 | 96.8101 | 26 | 16 | 26 | 17 | 10 | 58.8235 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2635 | 100.0000 | 96.5863 | 56.1233 | 481 | 0 | 481 | 17 | 13 | 76.4706 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8425 | 93.0514 | 98.8062 | 60.2346 | 616 | 46 | 1407 | 17 | 12 | 70.5882 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3319 | 98.5866 | 94.1781 | 59.8901 | 279 | 4 | 275 | 17 | 17 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.8248 | 96.2264 | 99.4772 | 49.0761 | 714 | 28 | 3235 | 17 | 15 | 88.2353 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.6012 | 95.7537 | 99.5214 | 52.8600 | 902 | 40 | 3535 | 17 | 15 | 88.2353 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.3846 | 99.2919 | 99.4776 | 66.9410 | 3225 | 23 | 3237 | 17 | 3 | 17.6471 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.2140 | 99.2589 | 99.1691 | 72.0797 | 2009 | 15 | 2029 | 17 | 3 | 17.6471 | |
| ciseli-custom | INDEL | * | map_l250_m2_e0 | homalt | 59.5745 | 48.6957 | 76.7123 | 96.9159 | 56 | 59 | 56 | 17 | 11 | 64.7059 | |
| ciseli-custom | INDEL | * | map_l250_m2_e1 | homalt | 60.0000 | 49.1379 | 77.0270 | 96.9384 | 57 | 59 | 57 | 17 | 11 | 64.7059 | |
| ciseli-custom | INDEL | * | tech_badpromoters | het | 56.4103 | 56.4103 | 56.4103 | 50.6329 | 22 | 17 | 22 | 17 | 10 | 58.8235 | |