PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64651-64700 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.3593 | 92.2917 | 96.5217 | 82.2462 | 443 | 37 | 444 | 16 | 15 | 93.7500 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.6364 | 95.1220 | 82.9787 | 75.7106 | 78 | 4 | 78 | 16 | 16 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7675 | 99.7915 | 99.7435 | 70.0911 | 6223 | 13 | 6223 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l150_m1_e0 | homalt | 99.6712 | 99.4855 | 99.8575 | 68.3134 | 11215 | 58 | 11215 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l150_m2_e0 | homalt | 99.6746 | 99.4871 | 99.8627 | 70.7014 | 11639 | 60 | 11639 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l150_m2_e1 | homalt | 99.6781 | 99.4927 | 99.8642 | 70.7146 | 11767 | 60 | 11767 | 16 | 12 | 75.0000 | |
| anovak-vg | INDEL | C6_15 | HG002complexvar | * | 55.5556 | 100.0000 | 38.4615 | 87.1287 | 4 | 0 | 10 | 16 | 4 | 25.0000 | |
| anovak-vg | INDEL | C6_15 | HG002complexvar | het | 50.0000 | 100.0000 | 33.3333 | 85.8824 | 4 | 0 | 8 | 16 | 4 | 25.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | het | 65.2174 | 57.6923 | 75.0000 | 77.5439 | 45 | 33 | 48 | 16 | 13 | 81.2500 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 95.3690 | 95.3623 | 95.3757 | 89.7329 | 329 | 16 | 330 | 16 | 1 | 6.2500 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3750 | 99.1863 | 99.5644 | 51.3896 | 3657 | 30 | 3657 | 16 | 13 | 81.2500 | |
| astatham-gatk | INDEL | I1_5 | map_siren | * | 97.3853 | 95.4077 | 99.4467 | 81.4805 | 2867 | 138 | 2876 | 16 | 5 | 31.2500 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.6848 | 91.6268 | 97.9540 | 67.5249 | 766 | 70 | 766 | 16 | 14 | 87.5000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6137 | 98.0720 | 99.1614 | 75.6166 | 1933 | 38 | 1892 | 16 | 8 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6137 | 98.0720 | 99.1614 | 75.6166 | 1933 | 38 | 1892 | 16 | 8 | 50.0000 | |
| astatham-gatk | SNP | * | map_l100_m0_e0 | homalt | 99.3208 | 98.7866 | 99.8608 | 60.2139 | 11479 | 141 | 11479 | 16 | 12 | 75.0000 | |
| astatham-gatk | SNP | * | map_l150_m1_e0 | homalt | 99.3312 | 98.8113 | 99.8566 | 68.4753 | 11139 | 134 | 11139 | 16 | 13 | 81.2500 | |
| astatham-gatk | SNP | * | map_l150_m2_e0 | homalt | 99.3470 | 98.8375 | 99.8618 | 70.8404 | 11563 | 136 | 11563 | 16 | 13 | 81.2500 | |
| astatham-gatk | SNP | * | map_l150_m2_e1 | homalt | 99.3541 | 98.8501 | 99.8633 | 70.8527 | 11691 | 136 | 11691 | 16 | 13 | 81.2500 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2955 | 97.2036 | 99.4122 | 43.2207 | 2607 | 75 | 2706 | 16 | 10 | 62.5000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1091 | 95.0450 | 93.1915 | 72.5788 | 211 | 11 | 219 | 16 | 4 | 25.0000 | |
| asubramanian-gatk | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 44.8276 | 0 | 0 | 0 | 16 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 80.9524 | 0 | 0 | 0 | 16 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 88.3212 | 0 | 0 | 0 | 16 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1850 | 95.5951 | 98.8287 | 37.6825 | 1237 | 57 | 1350 | 16 | 14 | 87.5000 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.3912 | 98.6014 | 98.1818 | 44.9656 | 846 | 12 | 864 | 16 | 14 | 87.5000 | |
| anovak-vg | INDEL | I16_PLUS | map_siren | homalt | 55.0459 | 66.6667 | 46.8750 | 67.3469 | 14 | 7 | 15 | 17 | 16 | 94.1176 | |
| anovak-vg | INDEL | I1_5 | map_l250_m0_e0 | * | 54.6638 | 58.3333 | 51.4286 | 98.2952 | 14 | 10 | 18 | 17 | 10 | 58.8235 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | * | 63.3663 | 60.3774 | 66.6667 | 86.5079 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | * | 63.3663 | 60.3774 | 66.6667 | 88.0282 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e1 | * | 63.3663 | 60.3774 | 66.6667 | 88.3295 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.9775 | 89.0167 | 99.5238 | 40.0705 | 3404 | 420 | 3553 | 17 | 17 | 100.0000 | |
| astatham-gatk | INDEL | * | map_l150_m0_e0 | het | 95.0292 | 95.0147 | 95.0437 | 93.4915 | 324 | 17 | 326 | 17 | 1 | 5.8824 | |
| astatham-gatk | INDEL | * | map_l250_m1_e0 | het | 93.5733 | 95.7895 | 91.4573 | 96.4356 | 182 | 8 | 182 | 17 | 2 | 11.7647 | |
| astatham-gatk | INDEL | * | map_l250_m2_e0 | het | 93.9252 | 95.7143 | 92.2018 | 96.5943 | 201 | 9 | 201 | 17 | 2 | 11.7647 | |
| astatham-gatk | INDEL | * | map_l250_m2_e1 | het | 93.9535 | 95.7346 | 92.2374 | 96.6702 | 202 | 9 | 202 | 17 | 2 | 11.7647 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2083 | 99.4128 | 99.0047 | 74.3003 | 1693 | 10 | 1691 | 17 | 5 | 29.4118 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.7733 | 90.0718 | 97.7922 | 67.5516 | 753 | 83 | 753 | 17 | 15 | 88.2353 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4872 | 99.3714 | 99.6033 | 48.0102 | 4268 | 27 | 4268 | 17 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2546 | 99.1437 | 99.3657 | 50.4529 | 2663 | 23 | 2663 | 17 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.9521 | 75.2294 | 97.5610 | 27.3958 | 656 | 216 | 680 | 17 | 17 | 100.0000 | |
| asubramanian-gatk | SNP | * | map_l100_m0_e0 | het | 48.7115 | 32.2235 | 99.7518 | 92.2778 | 6833 | 14372 | 6833 | 17 | 6 | 35.2941 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 58.5366 | 100.0000 | 41.3793 | 83.7989 | 12 | 0 | 12 | 17 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 58.5366 | 100.0000 | 41.3793 | 83.7989 | 12 | 0 | 12 | 17 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 10.5263 | 100.0000 | 5.5556 | 80.4348 | 1 | 0 | 1 | 17 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8385 | 87.0031 | 99.5129 | 39.9105 | 3327 | 497 | 3473 | 17 | 16 | 94.1176 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0981 | 99.5935 | 96.6469 | 61.7358 | 490 | 2 | 490 | 17 | 16 | 94.1176 | |
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | * | 95.9612 | 97.3770 | 94.5860 | 95.9242 | 297 | 8 | 297 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | * | 96.2742 | 97.5831 | 95.0000 | 96.1621 | 323 | 8 | 323 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | * | 96.2963 | 97.5976 | 95.0292 | 96.2426 | 325 | 8 | 325 | 17 | 4 | 23.5294 | |