PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64601-64650 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.9009 | 749 | 16 | 749 | 16 | 4 | 25.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2445 | 98.8084 | 99.6845 | 73.8057 | 5058 | 61 | 5056 | 16 | 7 | 43.7500 | |
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | het | 94.3590 | 96.8421 | 92.0000 | 96.2714 | 184 | 6 | 184 | 16 | 2 | 12.5000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 90.5987 | 83.2905 | 99.3127 | 36.1667 | 2268 | 455 | 2312 | 16 | 16 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.0523 | 82.0000 | 70.9091 | 81.7276 | 41 | 9 | 39 | 16 | 13 | 81.2500 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | het | 95.8589 | 93.7669 | 98.0464 | 66.4344 | 1038 | 69 | 803 | 16 | 11 | 68.7500 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | het | 98.2484 | 97.1302 | 99.3926 | 71.9668 | 2640 | 78 | 2618 | 16 | 8 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | * | 98.3132 | 97.8342 | 98.7970 | 80.6967 | 1310 | 29 | 1314 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | * | 98.3491 | 97.8801 | 98.8227 | 82.1466 | 1339 | 29 | 1343 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | * | 98.3812 | 97.9211 | 98.8456 | 82.2966 | 1366 | 29 | 1370 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.6821 | 90.4306 | 99.3530 | 87.4575 | 2457 | 260 | 2457 | 16 | 11 | 68.7500 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.6705 | 99.6705 | 99.6705 | 66.2895 | 4840 | 16 | 4840 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6119 | 99.7409 | 99.4832 | 68.3306 | 3080 | 8 | 3080 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.4539 | 98.0645 | 98.8464 | 84.0977 | 1368 | 27 | 1371 | 16 | 8 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 86.4198 | 78.3582 | 96.3303 | 63.2997 | 420 | 116 | 420 | 16 | 14 | 87.5000 | |
| rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8787 | 99.8366 | 99.9207 | 56.8327 | 20166 | 33 | 20166 | 16 | 7 | 43.7500 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2751 | 99.6037 | 98.9488 | 87.5654 | 1508 | 6 | 1506 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | SNP | ti | segdup | homalt | 99.8469 | 99.9067 | 99.7871 | 88.5156 | 7498 | 7 | 7498 | 16 | 16 | 100.0000 | |
| gduggal-snapvard | SNP | tv | map_l100_m1_e0 | homalt | 98.2646 | 96.7599 | 99.8168 | 61.4274 | 8750 | 293 | 8718 | 16 | 10 | 62.5000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 23.5294 | 13.9276 | 75.7576 | 73.7052 | 50 | 309 | 50 | 16 | 14 | 87.5000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 34.8632 | 22.3938 | 78.6667 | 77.6119 | 58 | 201 | 59 | 16 | 16 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | func_cds | het | 91.3978 | 100.0000 | 84.1584 | 48.7310 | 85 | 0 | 85 | 16 | 10 | 62.5000 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.2514 | 99.9113 | 98.6002 | 57.2710 | 1127 | 1 | 1127 | 16 | 10 | 62.5000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4433 | 100.0000 | 98.8927 | 33.8067 | 1427 | 0 | 1429 | 16 | 9 | 56.2500 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7530 | 99.7694 | 99.7366 | 55.3284 | 6058 | 14 | 6058 | 16 | 16 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | het | 97.3032 | 95.8801 | 98.7692 | 85.2424 | 1280 | 55 | 1284 | 16 | 1 | 6.2500 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e0 | het | 97.3384 | 95.9022 | 98.8183 | 86.3315 | 1334 | 57 | 1338 | 16 | 1 | 6.2500 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | het | 97.3710 | 95.9517 | 98.8330 | 86.4526 | 1351 | 57 | 1355 | 16 | 1 | 6.2500 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 51.7879 | 47.6190 | 56.7568 | 99.4738 | 20 | 22 | 21 | 16 | 13 | 81.2500 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 5.8824 | 68.5185 | 0 | 0 | 1 | 16 | 2 | 12.5000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | het | 93.3985 | 94.5545 | 92.2705 | 87.9230 | 191 | 11 | 191 | 16 | 3 | 18.7500 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 64.3676 | 52.1127 | 84.1584 | 21.7054 | 74 | 68 | 85 | 16 | 16 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 93.4156 | 0 | 1 | 0 | 16 | 5 | 31.2500 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | het | 92.5065 | 93.2292 | 91.7949 | 87.1287 | 179 | 13 | 179 | 16 | 2 | 12.5000 | |
| gduggal-snapplat | INDEL | D1_5 | func_cds | * | 86.3919 | 81.7610 | 91.5789 | 51.7766 | 130 | 29 | 174 | 16 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | func_cds | het | 81.7516 | 78.8235 | 84.9057 | 60.5948 | 67 | 18 | 90 | 16 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 49.1660 | 39.1892 | 65.9574 | 92.3328 | 29 | 45 | 31 | 16 | 5 | 31.2500 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 37.5633 | 25.3589 | 72.4138 | 74.4493 | 53 | 156 | 42 | 16 | 3 | 18.7500 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 90.3030 | 0 | 2 | 0 | 16 | 0 | 0.0000 | ||
| gduggal-snapplat | SNP | ti | * | hetalt | 95.9951 | 94.8454 | 97.1731 | 52.0745 | 552 | 30 | 550 | 16 | 15 | 93.7500 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 4.7019 | 2.5478 | 30.4348 | 66.6667 | 4 | 153 | 7 | 16 | 14 | 87.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 5.9197 | 3.2787 | 30.4348 | 64.6154 | 2 | 59 | 7 | 16 | 14 | 87.5000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 47.6817 | 34.6405 | 76.4706 | 72.3577 | 53 | 100 | 52 | 16 | 16 | 100.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 20.0000 | 100.0000 | 11.1111 | 88.6792 | 2 | 0 | 2 | 16 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | * | 41.1326 | 31.5789 | 58.9744 | 81.6901 | 24 | 52 | 23 | 16 | 1 | 6.2500 | |
| asubramanian-gatk | SNP | tv | HG002compoundhet | het | 98.0320 | 96.4691 | 99.6463 | 55.8548 | 4508 | 165 | 4508 | 16 | 9 | 56.2500 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1727 | 98.8666 | 99.4807 | 69.4042 | 3053 | 35 | 3065 | 16 | 11 | 68.7500 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 87.4317 | 91.9540 | 83.3333 | 94.2618 | 80 | 7 | 80 | 16 | 4 | 25.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | * | 92.1664 | 95.1049 | 89.4040 | 94.5171 | 136 | 7 | 135 | 16 | 2 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | * | 97.9095 | 98.9919 | 96.8504 | 88.8865 | 491 | 5 | 492 | 16 | 3 | 18.7500 | |