PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64551-64600 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 93.1550 | 88.6524 | 98.1395 | 56.7404 | 6039 | 773 | 844 | 16 | 16 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002complexvar | het | 56.0161 | 39.5489 | 95.9799 | 46.2162 | 263 | 402 | 382 | 16 | 16 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.2401 | 97.2678 | 97.2125 | 76.6096 | 534 | 15 | 558 | 16 | 13 | 81.2500 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | * | 97.5776 | 96.4152 | 98.7683 | 82.4696 | 1291 | 48 | 1283 | 16 | 5 | 31.2500 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | * | 97.5922 | 96.4181 | 98.7952 | 83.8737 | 1319 | 49 | 1312 | 16 | 5 | 31.2500 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e1 | * | 97.6023 | 96.4158 | 98.8183 | 83.9763 | 1345 | 50 | 1338 | 16 | 5 | 31.2500 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.1142 | 74.5902 | 88.8889 | 51.3514 | 91 | 31 | 128 | 16 | 16 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l100_m0_e0 | homalt | 99.4296 | 99.0017 | 99.8611 | 65.4925 | 11504 | 116 | 11504 | 16 | 10 | 62.5000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0040 | 98.6760 | 99.3342 | 81.0100 | 2385 | 32 | 2387 | 16 | 10 | 62.5000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | * | 82.4716 | 70.7792 | 98.7915 | 91.7846 | 1308 | 540 | 1308 | 16 | 6 | 37.5000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | het | 88.8512 | 80.5007 | 99.1347 | 90.4602 | 1833 | 444 | 1833 | 16 | 4 | 25.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.7817 | 749 | 16 | 749 | 16 | 3 | 18.7500 | |
| hfeng-pmm3 | SNP | tv | map_siren | homalt | 99.8898 | 99.8724 | 99.9071 | 55.8869 | 17218 | 22 | 17215 | 16 | 8 | 50.0000 | |
| jlack-gatk | INDEL | * | map_l100_m2_e1 | homalt | 98.7114 | 98.6729 | 98.7500 | 83.9418 | 1264 | 17 | 1264 | 16 | 8 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | * | hetalt | 94.8361 | 90.8432 | 99.1960 | 37.9289 | 1756 | 177 | 1974 | 16 | 15 | 93.7500 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.5610 | 98.3607 | 96.7742 | 71.5106 | 480 | 8 | 480 | 16 | 12 | 75.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.8587 | 90.8856 | 99.1952 | 37.8556 | 1755 | 176 | 1972 | 16 | 15 | 93.7500 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.8587 | 90.8856 | 99.1952 | 37.8556 | 1755 | 176 | 1972 | 16 | 15 | 93.7500 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.1723 | 98.0188 | 98.3264 | 71.8409 | 940 | 19 | 940 | 16 | 9 | 56.2500 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 83.0189 | 95.6522 | 73.3333 | 97.9784 | 44 | 2 | 44 | 16 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m0_e0 | het | 77.5000 | 93.9394 | 65.9574 | 98.0964 | 31 | 2 | 31 | 16 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 89.8148 | 94.1748 | 85.8407 | 90.7453 | 97 | 6 | 97 | 16 | 2 | 12.5000 | |
| jlack-gatk | INDEL | D6_15 | segdup | het | 90.9091 | 97.8261 | 84.9057 | 96.1483 | 90 | 2 | 90 | 16 | 2 | 12.5000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.6364 | 95.1220 | 82.9787 | 75.1323 | 78 | 4 | 78 | 16 | 16 | 100.0000 | |
| jlack-gatk | SNP | * | HG002compoundhet | homalt | 99.8516 | 99.8516 | 99.8515 | 34.5857 | 10766 | 16 | 10761 | 16 | 15 | 93.7500 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5407 | 96.4172 | 98.6907 | 74.9539 | 1211 | 45 | 1206 | 16 | 6 | 37.5000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9007 | 95.1331 | 98.7352 | 48.1982 | 1251 | 64 | 1249 | 16 | 11 | 68.7500 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.2172 | 86.9261 | 98.1941 | 63.7331 | 871 | 131 | 870 | 16 | 12 | 75.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7277 | 98.8115 | 98.6441 | 72.5709 | 1164 | 14 | 1164 | 16 | 16 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 95.8716 | 99.0521 | 92.8889 | 67.6259 | 209 | 2 | 209 | 16 | 15 | 93.7500 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.5603 | 90.2098 | 99.3517 | 87.1432 | 2451 | 266 | 2452 | 16 | 4 | 25.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.9578 | 85.8844 | 98.9556 | 88.3338 | 1515 | 249 | 1516 | 16 | 4 | 25.0000 | |
| hfeng-pmm1 | INDEL | * | map_siren | homalt | 99.4357 | 99.4727 | 99.3987 | 79.2482 | 2641 | 14 | 2645 | 16 | 9 | 56.2500 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002complexvar | het | 96.2431 | 94.4896 | 98.0630 | 66.6532 | 1046 | 61 | 810 | 16 | 6 | 37.5000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3868 | 99.5904 | 99.1841 | 39.0236 | 1945 | 8 | 1945 | 16 | 16 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | HG002complexvar | het | 95.7182 | 93.4959 | 98.0488 | 66.5579 | 1035 | 72 | 804 | 16 | 7 | 43.7500 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.9157 | 96.0422 | 95.7895 | 59.7031 | 364 | 15 | 364 | 16 | 16 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4633 | 93.6556 | 97.3422 | 77.2830 | 620 | 42 | 586 | 16 | 7 | 43.7500 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7268 | 96.3470 | 99.1467 | 74.4062 | 1899 | 72 | 1859 | 16 | 8 | 50.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7268 | 96.3470 | 99.1467 | 74.4062 | 1899 | 72 | 1859 | 16 | 8 | 50.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.0002 | 96.8379 | 99.1907 | 64.6712 | 1960 | 64 | 1961 | 16 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | map_l100_m0_e0 | homalt | 99.7813 | 99.7685 | 99.7941 | 63.0398 | 7756 | 18 | 7756 | 16 | 7 | 43.7500 | |
| hfeng-pmm2 | SNP | ti | map_l150_m1_e0 | homalt | 99.7953 | 99.8089 | 99.7817 | 70.9972 | 7313 | 14 | 7313 | 16 | 7 | 43.7500 | |
| hfeng-pmm2 | SNP | ti | map_l150_m2_e0 | homalt | 99.8031 | 99.8162 | 99.7900 | 73.1902 | 7602 | 14 | 7602 | 16 | 7 | 43.7500 | |
| hfeng-pmm2 | SNP | ti | map_l150_m2_e1 | homalt | 99.8050 | 99.8180 | 99.7921 | 73.2339 | 7679 | 14 | 7679 | 16 | 7 | 43.7500 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4016 | 92.2695 | 98.7539 | 72.0200 | 1301 | 109 | 1268 | 16 | 9 | 56.2500 | |
| hfeng-pmm1 | SNP | * | func_cds | * | 99.9366 | 99.9614 | 99.9119 | 23.2953 | 18143 | 7 | 18140 | 16 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | func_cds | het | 99.9015 | 99.9462 | 99.8567 | 23.9755 | 11155 | 6 | 11152 | 16 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.3126 | 96.8244 | 99.8472 | 79.3514 | 10458 | 343 | 10458 | 16 | 4 | 25.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.4660 | 95.2782 | 99.7566 | 78.6987 | 6558 | 325 | 6558 | 16 | 4 | 25.0000 | |