PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64151-64200 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | het | 97.1755 | 95.2994 | 99.1269 | 86.3845 | 1703 | 84 | 1703 | 15 | 8 | 53.3333 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 11.7647 | 95.0292 | 0 | 0 | 2 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 11.7647 | 95.0292 | 0 | 0 | 2 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 16.6667 | 93.4307 | 0 | 0 | 3 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.0955 | 97.0088 | 99.2068 | 77.5974 | 1881 | 58 | 1876 | 15 | 2 | 13.3333 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.6844 | 90.6909 | 99.0458 | 31.4136 | 1549 | 159 | 1557 | 15 | 15 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002compoundhet | hetalt | 98.4111 | 97.0028 | 99.8609 | 64.1248 | 10842 | 335 | 10768 | 15 | 15 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.3471 | 97.3466 | 99.3684 | 59.4294 | 2348 | 64 | 2360 | 15 | 9 | 60.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.9665 | 97.1234 | 98.8245 | 57.1668 | 1283 | 38 | 1261 | 15 | 8 | 53.3333 | |
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | het | 96.8156 | 94.0050 | 99.7994 | 59.7632 | 7464 | 476 | 7461 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.4979 | 97.1751 | 93.8776 | 69.0657 | 172 | 5 | 230 | 15 | 1 | 6.6667 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5851 | 99.5485 | 99.6217 | 39.7050 | 3969 | 18 | 3950 | 15 | 6 | 40.0000 | |
| qzeng-custom | SNP | ti | map_l150_m0_e0 | homalt | 72.5105 | 57.1894 | 99.0446 | 79.2025 | 1579 | 1182 | 1555 | 15 | 15 | 100.0000 | |
| qzeng-custom | SNP | tv | func_cds | * | 99.6678 | 99.6797 | 99.6560 | 35.7311 | 4357 | 14 | 4345 | 15 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | func_cds | het | 99.5488 | 99.6613 | 99.4365 | 40.8444 | 2648 | 9 | 2647 | 15 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | het | 93.2292 | 94.2105 | 92.2680 | 95.0218 | 179 | 11 | 179 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | het | 93.8679 | 94.7619 | 92.9907 | 95.2339 | 199 | 11 | 199 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | het | 93.8967 | 94.7867 | 93.0233 | 95.3524 | 200 | 11 | 200 | 15 | 1 | 6.6667 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.1764 | 97.4871 | 98.8756 | 71.7313 | 1319 | 34 | 1319 | 15 | 8 | 53.3333 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.6253 | 69.8745 | 98.1273 | 41.9144 | 835 | 360 | 786 | 15 | 11 | 73.3333 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | homalt | 98.4879 | 98.2070 | 98.7705 | 81.8398 | 1205 | 22 | 1205 | 15 | 10 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | homalt | 98.5288 | 98.2554 | 98.8038 | 83.0311 | 1239 | 22 | 1239 | 15 | 10 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | * | 96.5844 | 96.1089 | 97.0646 | 99.2093 | 494 | 20 | 496 | 15 | 5 | 33.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1754 | 99.4737 | 98.8789 | 38.7923 | 1323 | 7 | 1323 | 15 | 13 | 86.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 69.6183 | 92.3077 | 55.8824 | 66.9903 | 12 | 1 | 19 | 15 | 14 | 93.3333 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 84.8955 | 75.4173 | 97.0986 | 64.6133 | 497 | 162 | 502 | 15 | 11 | 73.3333 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 84.8955 | 75.4173 | 97.0986 | 64.6133 | 497 | 162 | 502 | 15 | 11 | 73.3333 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5944 | 99.7950 | 99.3947 | 49.7872 | 2434 | 5 | 2463 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4692 | 99.8734 | 99.0683 | 51.6226 | 1578 | 2 | 1595 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m1_e0 | het | 98.1622 | 96.5077 | 99.8745 | 59.1812 | 11938 | 432 | 11940 | 15 | 1 | 6.6667 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5345 | 99.7661 | 99.3039 | 36.1103 | 2133 | 5 | 2140 | 15 | 2 | 13.3333 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.4384 | 95.9432 | 96.9388 | 58.1197 | 473 | 20 | 475 | 15 | 12 | 80.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.8845 | 98.5348 | 97.2426 | 75.8758 | 538 | 8 | 529 | 15 | 15 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | HG002complexvar | hetalt | 87.9228 | 79.5656 | 98.2415 | 48.4281 | 806 | 207 | 838 | 15 | 15 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002compoundhet | hetalt | 66.4170 | 50.0717 | 98.6059 | 45.0179 | 1048 | 1045 | 1061 | 15 | 14 | 93.3333 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.8956 | 97.3822 | 98.4144 | 74.9934 | 930 | 25 | 931 | 15 | 13 | 86.6667 | |
| mlin-fermikit | SNP | * | func_cds | het | 99.3878 | 98.9159 | 99.8643 | 18.4193 | 11040 | 121 | 11040 | 15 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 76.9887 | 88.5714 | 68.0851 | 93.5351 | 31 | 4 | 32 | 15 | 14 | 93.3333 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | * | 61.5385 | 100.0000 | 44.4444 | 64.4737 | 12 | 0 | 12 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e1 | het | 68.9655 | 93.7500 | 54.5455 | 96.5300 | 15 | 1 | 18 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7242 | 99.5972 | 99.8516 | 52.5270 | 10137 | 41 | 10092 | 15 | 11 | 73.3333 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.2079 | 95.2756 | 91.2281 | 74.8899 | 121 | 6 | 156 | 15 | 5 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 83.2909 | 81.2500 | 85.4369 | 92.7821 | 52 | 12 | 88 | 15 | 2 | 13.3333 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 95.5752 | 0 | 0 | 0 | 15 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.3984 | 91.5194 | 95.3560 | 62.7021 | 259 | 24 | 308 | 15 | 12 | 80.0000 | |
| qzeng-custom | INDEL | I1_5 | segdup | het | 97.4851 | 97.5836 | 97.3868 | 95.7292 | 525 | 13 | 559 | 15 | 2 | 13.3333 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | homalt | 90.9566 | 86.6295 | 95.7386 | 91.9173 | 311 | 48 | 337 | 15 | 15 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 44.4444 | 57.1429 | 0 | 37 | 12 | 15 | 5 | 33.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 44.4444 | 57.1429 | 0 | 16 | 12 | 15 | 5 | 33.3333 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m0_e0 | * | 77.9468 | 83.3333 | 73.2143 | 97.7734 | 20 | 4 | 41 | 15 | 3 | 20.0000 | |