PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64051-64100 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e1 | * | 81.5504 | 81.1765 | 81.9277 | 93.4646 | 69 | 16 | 68 | 15 | 11 | 73.3333 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e1 | het | 86.2385 | 100.0000 | 75.8065 | 94.4395 | 47 | 0 | 47 | 15 | 11 | 73.3333 | |
| gduggal-bwavard | INDEL | I16_PLUS | HG002complexvar | homalt | 81.9370 | 72.8155 | 93.6709 | 46.7416 | 225 | 84 | 222 | 15 | 7 | 46.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 59.4595 | 59.4595 | 59.4595 | 84.3882 | 22 | 15 | 22 | 15 | 6 | 40.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 62.0650 | 56.1404 | 69.3878 | 99.4106 | 32 | 25 | 34 | 15 | 8 | 53.3333 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 53.4400 | 37.6975 | 91.7582 | 47.5504 | 167 | 276 | 167 | 15 | 13 | 86.6667 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | * | 67.0103 | 57.0175 | 81.2500 | 85.1852 | 65 | 49 | 65 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | * | 67.0051 | 56.8966 | 81.4815 | 86.4775 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 67.0051 | 56.8966 | 81.4815 | 86.6776 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.8315 | 98.4480 | 99.2179 | 58.3587 | 1903 | 30 | 1903 | 15 | 15 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5753 | 98.5294 | 98.6213 | 85.3547 | 1072 | 16 | 1073 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e0 | * | 98.6439 | 98.6002 | 98.6877 | 86.0337 | 1127 | 16 | 1128 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | * | 98.6603 | 98.6171 | 98.7035 | 86.0971 | 1141 | 16 | 1142 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D6_15 | HG002complexvar | het | 98.7528 | 98.0128 | 99.5040 | 56.9844 | 3058 | 62 | 3009 | 15 | 10 | 66.6667 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | homalt | 98.8047 | 97.7741 | 99.8572 | 33.1849 | 10542 | 240 | 10491 | 15 | 8 | 53.3333 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | het | 96.6928 | 93.8640 | 99.6973 | 80.4597 | 4941 | 323 | 4941 | 15 | 4 | 26.6667 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6765 | 99.9590 | 99.3956 | 49.5528 | 2438 | 1 | 2467 | 15 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5326 | 100.0000 | 99.0695 | 50.6581 | 1580 | 0 | 1597 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.0239 | 89.8477 | 98.6072 | 53.8165 | 1062 | 120 | 1062 | 15 | 14 | 93.3333 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | het | 96.5544 | 94.7111 | 98.4709 | 76.6706 | 967 | 54 | 966 | 15 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | HG002complexvar | homalt | 99.2171 | 98.4618 | 99.9840 | 23.0284 | 93648 | 1463 | 93634 | 15 | 13 | 86.6667 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4442 | 99.2523 | 99.6368 | 83.0397 | 4115 | 31 | 4115 | 15 | 7 | 46.6667 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 23.5849 | 13.9276 | 76.9231 | 73.7903 | 50 | 309 | 50 | 15 | 14 | 93.3333 | |
| jpowers-varprowl | INDEL | * | tech_badpromoters | * | 74.4828 | 71.0526 | 78.2609 | 53.6913 | 54 | 22 | 54 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | * | tech_badpromoters | het | 74.4186 | 82.0513 | 68.0851 | 50.5263 | 32 | 7 | 32 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | * | 94.4444 | 94.1176 | 94.7735 | 91.6932 | 272 | 17 | 272 | 15 | 6 | 40.0000 | |
| jli-custom | SNP | * | map_l250_m0_e0 | het | 96.5658 | 94.2895 | 98.9547 | 90.3152 | 1420 | 86 | 1420 | 15 | 7 | 46.6667 | |
| jli-custom | SNP | ti | map_siren | homalt | 99.8561 | 99.7521 | 99.9604 | 48.6440 | 37822 | 94 | 37819 | 15 | 15 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6450 | 99.3179 | 97.9812 | 73.0406 | 728 | 5 | 728 | 15 | 10 | 66.6667 | |
| jmaeng-gatk | INDEL | * | map_l250_m0_e0 | * | 87.9518 | 93.5897 | 82.9545 | 98.5586 | 73 | 5 | 73 | 15 | 2 | 13.3333 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.4573 | 97.8921 | 99.0291 | 73.9064 | 1579 | 34 | 1530 | 15 | 10 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5281 | 99.6497 | 97.4315 | 67.4470 | 569 | 2 | 569 | 15 | 15 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m1_e0 | * | 97.1910 | 95.2065 | 99.2600 | 81.6893 | 2006 | 101 | 2012 | 15 | 3 | 20.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e0 | * | 97.2353 | 95.2641 | 99.2898 | 83.0932 | 2092 | 104 | 2097 | 15 | 3 | 20.0000 | |
| ltrigg-rtg1 | INDEL | * | segdup | het | 98.2095 | 97.4761 | 98.9540 | 92.5626 | 1429 | 37 | 1419 | 15 | 2 | 13.3333 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 94.5055 | 95.8693 | 0 | 1 | 258 | 15 | 3 | 20.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 94.5055 | 95.8693 | 0 | 1 | 258 | 15 | 3 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.0444 | 86.0070 | 98.9933 | 33.2437 | 1469 | 239 | 1475 | 15 | 15 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.3002 | 90.5190 | 98.4110 | 62.1036 | 907 | 95 | 929 | 15 | 5 | 33.3333 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.8645 | 100.0000 | 97.7545 | 71.3796 | 653 | 0 | 653 | 15 | 14 | 93.3333 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3317 | 98.8017 | 99.8674 | 38.4766 | 11296 | 137 | 11293 | 15 | 3 | 20.0000 | |
| hfeng-pmm3 | SNP | ti | HG002complexvar | homalt | 99.9848 | 99.9773 | 99.9922 | 18.4374 | 193419 | 44 | 193409 | 15 | 15 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1505 | 98.3978 | 99.9147 | 54.8907 | 17565 | 286 | 17565 | 15 | 4 | 26.6667 | |
| hfeng-pmm3 | SNP | ti | map_l100_m0_e0 | homalt | 99.7684 | 99.7299 | 99.8069 | 62.9000 | 7753 | 21 | 7753 | 15 | 6 | 40.0000 | |
| hfeng-pmm3 | SNP | ti | map_l150_m1_e0 | homalt | 99.7816 | 99.7680 | 99.7952 | 70.9268 | 7310 | 17 | 7310 | 15 | 6 | 40.0000 | |
| hfeng-pmm3 | SNP | ti | map_l150_m2_e0 | homalt | 99.7899 | 99.7768 | 99.8030 | 73.1277 | 7599 | 17 | 7599 | 15 | 6 | 40.0000 | |
| hfeng-pmm3 | SNP | ti | map_l150_m2_e1 | homalt | 99.7920 | 99.7790 | 99.8050 | 73.1684 | 7676 | 17 | 7676 | 15 | 6 | 40.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.5879 | 97.0976 | 96.0836 | 58.4599 | 368 | 11 | 368 | 15 | 15 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.5638 | 88.7324 | 80.7692 | 54.9133 | 63 | 8 | 63 | 15 | 15 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_siren | het | 98.8087 | 98.2872 | 99.3357 | 77.5055 | 2238 | 39 | 2243 | 15 | 0 | 0.0000 | |