PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63851-63900 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e0 | * | 98.9412 | 98.9035 | 98.9788 | 84.3278 | 1353 | 15 | 1357 | 14 | 4 | 28.5714 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e1 | * | 98.9616 | 98.9247 | 98.9986 | 84.3973 | 1380 | 15 | 1384 | 14 | 4 | 28.5714 | |
| bgallagher-sentieon | SNP | * | map_l125_m0_e0 | homalt | 99.5370 | 99.2849 | 99.7904 | 67.2503 | 6664 | 48 | 6664 | 14 | 10 | 71.4286 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4759 | 99.4255 | 99.5264 | 47.7277 | 2942 | 17 | 2942 | 14 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2629 | 99.2900 | 99.2358 | 50.5266 | 1818 | 13 | 1818 | 14 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7634 | 99.8753 | 99.6517 | 47.8261 | 4006 | 5 | 4006 | 14 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6469 | 99.8428 | 99.4518 | 50.2823 | 2540 | 4 | 2540 | 14 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | map_l100_m1_e0 | homalt | 99.7937 | 99.6659 | 99.9218 | 56.9365 | 17900 | 60 | 17900 | 14 | 12 | 85.7143 | |
| bgallagher-sentieon | SNP | ti | map_l100_m2_e0 | homalt | 99.7949 | 99.6668 | 99.9233 | 59.4718 | 18248 | 61 | 18248 | 14 | 12 | 85.7143 | |
| bgallagher-sentieon | SNP | ti | map_l100_m2_e1 | homalt | 99.7943 | 99.6648 | 99.9241 | 59.4504 | 18432 | 62 | 18432 | 14 | 12 | 85.7143 | |
| astatham-gatk | SNP | * | map_l125_m0_e0 | homalt | 99.0469 | 98.3164 | 99.7883 | 67.5212 | 6599 | 113 | 6599 | 14 | 11 | 78.5714 | |
| astatham-gatk | SNP | ti | map_l100_m1_e0 | homalt | 99.6258 | 99.3318 | 99.9216 | 57.0466 | 17840 | 120 | 17840 | 14 | 13 | 92.8571 | |
| astatham-gatk | SNP | ti | map_l100_m2_e0 | homalt | 99.6302 | 99.3391 | 99.9231 | 59.5727 | 18188 | 121 | 18188 | 14 | 13 | 92.8571 | |
| astatham-gatk | SNP | ti | map_l100_m2_e1 | homalt | 99.6312 | 99.3403 | 99.9239 | 59.5512 | 18372 | 122 | 18372 | 14 | 13 | 92.8571 | |
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 88.7097 | 0 | 0 | 0 | 14 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 80.2817 | 0 | 0 | 0 | 14 | 0 | 0.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 14 | 3 | 21.4286 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.1560 | 0 | 0 | 0 | 14 | 3 | 21.4286 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 14 | 3 | 21.4286 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 88.4298 | 0 | 0 | 0 | 14 | 3 | 21.4286 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 70.4500 | 58.7209 | 88.0342 | 68.5484 | 101 | 71 | 103 | 14 | 5 | 35.7143 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | homalt | 87.6855 | 81.0440 | 95.5128 | 86.5285 | 295 | 69 | 298 | 14 | 13 | 92.8571 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e1 | homalt | 87.8083 | 81.1828 | 95.6113 | 86.4773 | 302 | 70 | 305 | 14 | 13 | 92.8571 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 52.0833 | 43.8596 | 64.1026 | 99.3572 | 25 | 32 | 25 | 14 | 11 | 78.5714 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | * | 75.4516 | 68.9320 | 83.3333 | 89.1892 | 71 | 32 | 70 | 14 | 12 | 85.7143 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | * | 79.8890 | 78.0488 | 81.8182 | 91.2201 | 64 | 18 | 63 | 14 | 9 | 64.2857 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | * | 79.8957 | 77.6471 | 82.2785 | 91.1236 | 66 | 19 | 65 | 14 | 9 | 64.2857 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 10.1868 | 6.3158 | 26.3158 | 62.7451 | 6 | 89 | 5 | 14 | 2 | 14.2857 | |
| astatham-gatk | INDEL | D16_PLUS | * | hetalt | 96.8051 | 94.4128 | 99.3217 | 38.8807 | 1825 | 108 | 2050 | 14 | 14 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 93.7269 | 90.6883 | 96.9762 | 47.9190 | 224 | 23 | 449 | 14 | 14 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.8289 | 94.4588 | 99.3210 | 38.8312 | 1824 | 107 | 2048 | 14 | 14 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.9811 | 99.2278 | 94.8339 | 60.4956 | 257 | 2 | 257 | 14 | 13 | 92.8571 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.8289 | 94.4588 | 99.3210 | 38.8312 | 1824 | 107 | 2048 | 14 | 14 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 98.2021 | 97.5649 | 98.8477 | 61.4163 | 1202 | 30 | 1201 | 14 | 12 | 85.7143 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.4375 | 99.2995 | 97.5904 | 67.0261 | 567 | 4 | 567 | 14 | 14 | 100.0000 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | * | 58.0625 | 40.9300 | 99.8635 | 87.2733 | 10246 | 14787 | 10244 | 14 | 2 | 14.2857 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e1 | * | 58.2603 | 41.1264 | 99.8655 | 87.2297 | 10398 | 14885 | 10396 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9204 | 99.9646 | 99.8762 | 56.3374 | 11292 | 4 | 11292 | 14 | 13 | 92.8571 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e0 | homalt | 99.1696 | 99.4449 | 98.8959 | 84.6359 | 1254 | 7 | 1254 | 14 | 6 | 42.8571 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | homalt | 99.1826 | 99.4536 | 98.9130 | 84.6885 | 1274 | 7 | 1274 | 14 | 6 | 42.8571 | |
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | het | 94.8454 | 96.8421 | 92.9293 | 96.3327 | 184 | 6 | 184 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | het | 95.3271 | 97.1429 | 93.5780 | 96.4748 | 204 | 6 | 204 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | het | 95.3488 | 97.1564 | 93.6073 | 96.5517 | 205 | 6 | 205 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | D16_PLUS | * | hetalt | 96.4203 | 93.6886 | 99.3161 | 38.7676 | 1811 | 122 | 2033 | 14 | 14 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | HG002complexvar | hetalt | 93.0557 | 89.4737 | 96.9365 | 48.0682 | 221 | 26 | 443 | 14 | 14 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1285 | 99.7807 | 98.4848 | 70.2320 | 910 | 2 | 910 | 14 | 11 | 78.5714 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4163 | 93.6820 | 99.3151 | 38.7290 | 1809 | 122 | 2030 | 14 | 14 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2903 | 98.1771 | 96.4194 | 85.9201 | 377 | 7 | 377 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.4163 | 93.6820 | 99.3151 | 38.7290 | 1809 | 122 | 2030 | 14 | 14 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8275 | 97.5066 | 98.1506 | 66.5044 | 743 | 19 | 743 | 14 | 8 | 57.1429 | |